RNA id: XM_022677747.1


Basic Information

Item Value
RNA id XM_022677747.1
length 4576
RNA type mRNA
GC content 0.57
exon number 23
gene id tnr
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 814838 ~ 969334 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagagagagagagaagcaaggTGCAGCTTCCCACACTGCAGCCGCGACGGGCAGGCTGATAGGAGCTGGGTTTAAACGCTGGTAACTGCAGGCCGTATCACACCTTCAGCTCGGCAGATCGATACGGCAGCGGCGGAGGAGCAGCAGCTTCTCCTCAGGGTTCGGAGGAGAAGAAACCAGACGCCAGCATCACACGGCCGACAGCGACATCACTTCCTGCGCTCGTCTCACTCGGAGAAGAAAACTGCTGACTCTGTGAAGACATCATAATGTGCTAAATGCTAACTCTCCTCCTGGGAGGTTAAACTGCTGAAGAAGAGAGGGAGGACTCCTATTGGCTCTTTTCTGAAGATTTGAACAAATCAGCAGTTCGGATTGGAATCTAAAGATCCTCCATCGTAATAAAGACCCTCCACCTCAGCTATGATGTGCTGGTGCGGCGTGGTGGTGATGTGGAGCTCTCTGCTGGTCCTGATGCTGACGTTCCTCGGAGCTGAAGCCCTCCCAGCTCGTGATGCTAAACTGGTGAGGACCACCAGGTTCAGACGGCAGACCCCCGACGACCTCCAGAGCAACCAGACGCAGCCAATGATCTTCAACCACGTCTACAACATCAACGTTCCGCTGGAGTCCCTGTGCTCCGTGGATCTGGACTCCAGCTCGGACTCCCCGCCCCCCGATAAACTGCCCACCGAGTACACGGAGCAGACCGCCGACTCCGACAGCCAGGTGACCTTCACCCACCGCATCAACATCCCCAAACAGGCGTGCGGCTGCCCCGCCTCCACCTCCGCCATGCTGCAGCAGCTGGCCAGCCGGGTGGAGATGCTGGAGAGGGAGGTGTCGATGCTGCGGGAGCAGTGCAGCGGCGGATGCTGCGGAGAGAGCTCTGTTGTCGGTCGTCTGGACTTTGTCCCGCAGTGCAGTGGTCACGGGACGTTCAGTATGGAGGtgtgcgggtgtgtgtgtgaggacgGCTGGACGGGGAAGAATTGCTCGGAGGCGAGGTGTGTGGACGACTGCTCGgggcagggtgtgtgtgtggagggcgagtgtgtgtgtgatcgggACTTCGGGGGGGAGAACTGCTCGGAGGCGAGGTGTCCGGGGGACTGCTCGGACCGCGGGCTGTGTGTGGacggggagtgtgtgtgtgaggaggcgTACTCGGGGGAGGACTGCTCGGTCAGCCGCTGTCTGAACGACTGCTCGGATCAGGGCGTCTGTGTGAACGGGACGTGCCGGTGCAGGACGGGGTTCCTAGGGGATGACTGCTCGCGCCTCTTCTGCGCCAACAACTGCAGCCAGAGGGGGGCGTGCCGGGACGGGTTCTGCACCTGCCAGGAGGGGTACGCCGGAGACGACTGCGCTGCAGTGGCTCCTGCGGTGAACCTGCGGGTGCAGGGCGTGACGGAGCGCAGCGTGGACGTGGAGTGGGAGGGGTCTGTGGTCGTGACGGATTACCTGATCACCTACGTTCCCACGAGCCCCGGCGGAGTCCAGCtggagctgagggtggaggGAAACGTGACGAACACCACCATCAGAGAGCTGGAGCCGGGTCTGGAGTACAGCATTAACGTCTACGCCGTGATCAATAACGTCATCAGCGTCCCCGTCAGCGCCCTCGTCTCCACCTATCTTTCGAATCCAGACGGTTTACTCTTCAAATCCATCACGGAGACGTCTGTGGAGGTTCAGTGGCAACCCTTCGACTACTTGTTTGATGGCTGGGAAATAAGCTTCATTCCCAAGgatAATGATGGAGGAATGACGGCTCAGCTCCCCAGCACCATCACCTCCTTCCATCAGACTGGATTGAAGCCTGGAGAGGAGTACACCGTCAACCTGGTGGCTCTGAAGGATCAGGGGAGGAGCCAGCCCGTCACCGCCACGGTCACCACACTAATCGATGGACCGACCCAGCTCATAGTCCGTGACGTGTCCGACACTGTGGCGTTCGTAGAGTGGACGCCGCCCAGAGCTAAAGTGGATCAGATCGTCCTGCGTTACGGATTAGCCGGAGATGACGGACCCAAGACCACCTTCCGCTTGGAGCCGACTCTGAGCCAGTACTCCCTGCAGGTCCTGCGCCCCGGATCCAGATACGAGGTTTCCGTCAGCGGAGTTCGAAAGGGCAACGAGAGCGGATCCATATCAGCTGAGTTTACTACGGttttttcgTTTTTCTCAGAAATCGATGCACCGAAGAACCTGCGGGTGCTGGATAAGAGCTCCACCACGCTGGACCTGGAGTGGGAGAACAGCGAGGCGGAGGTGGAGGGATACCGGGTGGTGTACAGCACTCTGGCTGGAGAACAGTACGATACGGTCATAGTGCAACGTGATGAAGGGGCCACCACTAAAACCACTCTCACTGACCTGCAGCCAGGTACAGAATATGGAATTGGAATATCAGCCATTCTTGGCACCAACCAAAGCATCCCAGCCACCATGAACGCCAGGACGGGTCTGGACGTCCCGATGGACCTGATGCTCACCGACTCCACAGATAACACCATCTCTCTGCTGTGGGGGACGGTCCAGGGACCCATAGATCACTACAGGGTGACCTACACCTCCGCCAGCGGCGTGACCACCGAGGTGACGGTGCCCAAAGATCTCAACAGAACTACGCTGAGCGGCCTGGAGCCCGGCACCGAGTACACCATCACCGTCACCGCCCAGAGAGGCAGACAGCAGAGCTCTGCCGCCACCATCGACGCCTTCACAGGTATGGATCCTCCGAGAGAGATAACGGTGTCGTACGTCACAGAAGACTCAGTGACCATATCCTGGATCCAGCCTCTCGCTCCATTCAATTACTACAAGATGTCGTACCAGTCTGCTAAAGGTCGAGTGGACAGCGTGGTCATAGACAAGGAGGCGAGTAACTACACCCTGACCAGCCTCCACCCGGCGACAGAATACGAGATACAGCTGAACGCGGTTCGAGGAAGCCAGGAGAGCAGAGTCATCAGCACCAGCGTCTTCACAGCGATGGACATGCCGATGGAGCTGACCGCCCTGAACGTCACCCCCCAGGGGGCGCTGCTGCGCTGGACCCCACCGCTCTCCAGTGTCGACAACTACGTCCTTACACTAACCCGTAACCAGGTAACAGCGGATACGGTGCTGGTAGACGGGAATAAACAGGATTATCAGCTGAGTCAGCTGGTTCCCAGTACTGCTTACTCAGTGGCTCTCTACGCCACCAAGGGCCCTCTCACCAGCGGCACCGTCATCTCCAACTTCGTCACGCCCATGGACGCTCCTCAGAACCTGACAGCCAGCGAGGTGAACCACCGCAGCGCCCTCATCTCCTGGCAGCCGCCCATCGCCGACATCGACAACTACATGCTGACCTACAAATCATTCGACGGCAGCCGGAAGGAGCTGATTCTGGACGCTGAGGATACCTGGATCCGGCTGGAGGGTCTGGCGGAGACCACCGAGTATACCATCAGACTACAGGCAGCCCGAGGCCTGGAGACCAGCGCCATTGTCTCCACCTCCTTCACCACAGGTAATCGATTATTCGCCATGCCTCAGAACTGCGCTCAGCACCTGCTGAACGGCGAGCTCCTGAGCGGCGTCTACACCATATACATCAACCGAGACCCCAACCAGGGCGTGCAGGTCTACTGCGACATGAGCACGGACGACGGCGGCTGGATCgtgtttcaGCGTCGCCAGAACGGCCTGACTGATTTCTCCAGGAAGTGGAGCGACTACAGGACGGGCTTCGGGAATCTGGAGGATGAATTCTGGCTGGGTCTGGACAACATTCAGAAGATTTCAGCTCAGGGTCGTTACGAGCTCCGCATCGACATGAGGGACGGCCAAGAGGCGGTTTACGCCAACTATGACCGATTCTCCATCGGAGACACCAAGAACCTCTACAAGCTGAGGATAGGAGAATACAACGGCACTGCAGGTGATTCTCTGAGTTATCACCAGGGCCGACCCTTCTCCACCAAAGACCGAGATCACGACATCGCCGTCACCAACTGCGCCCTGTCCTACAAAGGAGCCTGGTGGTATAAGAACTGCCACAGAGCCAACCTCAACGGCAAATACGGAGAATCCAGACACAGCCAGgGCATCAACTGGTACCATTGGAAAGGCCACGAGTTTTCCATCCCTTTTGTGGAGATGAAGATGAGACCCTACAACTACCGCAGCATCAGCGGCAAGCGGAGGAGGTCCGCCCCCCATTaataagcccctccccctccccctgtATTACTTAGCTGTTCCTATTTTTACATGCGGTGAGGAGAAGAGAGGCTGtgtaaactgtttaaactgtttaaactttAGGAGAACGTTGAACAGAGATGATGAGAAGATCCCCTTTTATGTAGAACCTCGTTCACAGGTGCGGTACGGTGTAAAGATTACGATGAGCGACTGGCGAAAAGAGTAAAAACAACCtacattaattttaaaacacgttagaaaagggttttattttaactccttTGAAGAAGAAAGTTTTAGAAGAAAACAGACGcccagaaaaataagagacttctATTTTTGTAActcgtgaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007411 axon guidance biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186362 lncRNA upstream 64428 749841 ~ 750410 (+) True G137737
TU186354 lncRNA upstream 160389 654221 ~ 654449 (+) True G137729
TU186349 lncRNA upstream 287771 526248 ~ 527067 (+) True G137725
TU186264 lncRNA upstream 457019 343868 ~ 357819 (+) True G137669
XR_452701.2 lncRNA downstream 11599 980933 ~ 986154 (+) True LOC103021626
TU186427 lncRNA downstream 132054 1101388 ~ 1226517 (+) True G137782
TU186509 lncRNA downstream 381940 1351274 ~ 1455746 (+) True G137839
TU186520 lncRNA downstream 470929 1440263 ~ 1440805 (+) True G137850
TU186489 lncRNA downstream 522482 1491816 ~ 1499956 (+) True G137826
XM_022677743.1 mRNA upstream 33642 762715 ~ 781196 (+) False rfwd2
XM_022677742.1 mRNA upstream 33642 762716 ~ 781196 (+) True rfwd2
XM_022677736.1 mRNA upstream 120115 438698 ~ 694723 (+) True astn1
XM_015603959.2 mRNA downstream 17087 986421 ~ 987706 (+) True kiaa0040
XM_022677751.1 mRNA downstream 68527 1037861 ~ 1039970 (+) True mrps14
XM_022677752.1 mRNA downstream 71556 1040890 ~ 1044717 (+) True cacybp
XM_022677753.1 mRNA downstream 76933 1046267 ~ 1057525 (+) True plk3
XM_022677754.1 mRNA downstream 100673 1070007 ~ 1082320 (+) True LOC103047582
XR_002651002.1 other upstream 33642 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 720265 93285 ~ 94573 (+) True G137614
TU186393 other downstream 11646 980980 ~ 988638 (+) True G137756
TU186409 other downstream 68535 1037869 ~ 1039926 (+) False mrps14
TU186490 other downstream 527965 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 657621 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 866143 1835477 ~ 1838517 (+) False LOC103042893

Expression Profile