RNA id: XM_022677781.1


Basic Information

Item Value
RNA id XM_022677781.1
length 2998
RNA type mRNA
GC content 0.52
exon number 26
gene id dpp6
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2102221 ~ 2230065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCTTTTTCTCTTCATATTTCACTTAAAGGAGCGTTTTTATTCACTGTATGAGCGAAAAGAGGCGGATAGGAGCGAAACTGAAGGACTGTTCTTACTGTGAGACTCCGGCGGAGGGATGAACTCCTCAGCGGGGGCGGGAAACTACCGGAGAGGCTCCACTAAAGGAGACAAGGAGCTGGTGGGTAGTGCTCCTGCTCAGAGGAACTGGAAGGGAATCGCTATCGCTCTGCTTGTCATTCTGGTCATCTGCTCTCTGATCATCACCTCCGTTATCCTGCTGACGCCACGTGAAGATGACAGCTTGGCCTCAAAGAAGAAAATTACCATCGAGGATCTGTTCAGAAAAGAGCTGCAGGGTCACGACCCCGAGGCCAAATGGCTCAGCGactCTGAGCTCCTGTATCGTAACCGGGATGGAGATGTGGTTAAGCTGGATGTGGAGAGCAACACGACGGTGGTGCTGGTGGACAACAAGATGTTTGAAACGTATAAAGCCAGTAAATACCAGATCTCTCCTGATTTGACTCATGTGCTGCTGGCCTACAATGTTGTTCCATTGTACCAGTATTCGTATACAGCTTCTTATATCATCTGCAGTTTGTACACGCCGGACACAGTGGTTTTAGCTGCTCCTGAGGTGGAGAACACCATGCTGCAGTTCGCTGGATGGGGTCCTAAAGGACAGCAGCTGATCTTCATATTTGAGAACAACATCTATTACCAGGCCACAGTGAGGGACAAGCCCATCCGCCTGGTCACCTCCGGGAGAGAGGGCGTGATATTTAACGGACTCACCGACTGGCTTTATGAAGAGGAGATTTTCCAGAGTTATATTTCTCACTGGTGGTCCCCAGACGGCCTCAGACTGGCGTACGCCACCATCAACGACACCCTCGTACCCAAGATGGAAATGCCCATGTTTACCGGCAGCCTGTACCCGGGTGCCCAGGAGTACAGATACCCAAAAGCTGGAGAGGAGAATCCTGAGATCTATCTCTCAGTGGTCAGTGTGAATGGACCCCTCCATACTGTACAGATGAAGAAACCTGAGGACCCCAGAATCGGGAAGGAGTATTACATCACCATGGTGAAGTGGGCTACCAGCACCAAGTTGGCAGTGAACTGGCTGAACCGAGCTCAGAACAACTCCATCCTCACCCTgtgtgaagccaccacaggaaTCTGCACCAAGAAACACGAGGACGAGAGCGACAGCTGGCTCCACAGACAGAATGAAGCTCCTCTCTTCTCCAGGGATGGTCTCAGGTTCTTCTTCACCCGGGCGGTTCCACAGGGGGGTCGAGGAAAGTTCTTTCACATCTCCATGTCCACTTCCCAGcacaacagcAGTTCTGATACGCTGCAGTCTCTGACCTCGGGAGATTGGGACGTCACAGAGATTTTGGCGTACAACGAAGAAACGCAGCTCGTATATTTCCTGAGCACAGAAGACAGTCCTAGAAAACGGCAGCTGTACAGTGCGGACACCACCGGCTCCTTCAACAGACGCTGCCTGTCCTGTGAGTTTAGCTGTGGATACGTCAGCGGCTCCTTCAGCCCTGAATCCAGCTACTTCCTCCTGAACTGTAAAGGTCCTCGATCTCCTTACACAGCGGTCTACATCTCGCAGGACAGACAGTATAAAAAGCTGCTGGACGTGGAGACAAATGAATTGCTGAATTTAACAGTGAGCTCCATGCAGGAACCCTCCGTACATTACCAGGAAATCACTATCGATGATTACTCTCTCTCCATCCAGATCCTGAAGCCGGCAGGGTTTAAAGAAGCGGCCCACTACCCACTACTGCTGCTGGTGGATGGGACCCCTGGTGGTCAGGTGGTGACGGAGCAGTTTCAGGTGGACTGGGCCACAGTGCTGGTGAGCTCCTACAGCATCATCGTTATTCGCTTCGACGGCCGGGGGAGTGGCTTCCAGGGGACCAACCTGCTGCACCGAGTGAAGAGGAAACTCGGACAGATGGAGGAGATCGACCAGTTGGAGGCTTTAAGAATCATTTCACAGGAGTCGTACGTGGACAAGAGCAGGATCGGAGTGTTCGGAAGGGTATATGGAGGATACGTGGCGAGTCTTCTCCTGGGATCTGAAGATTCTCCATTTAAATACAACGTTAAGTTTAAATGTGGAGCGGTCGTCTCGCCCATCACCGACTTCAGCTTATACGCTTCAGCATTCTCAGAGCGCTATTTAGGATTACCCCGAGCCAATCAGAGAGTGTATGAGGTTTCAAATTTAGCGCAGCGCTCAGGACGCCTAGACGATAAGAAGTTCCTGATTATTCACCCTACAGCTGACGAAAAAGTCCATTTCCAGCACACGGCGAAATACATCACCCATCTAATAAACGAGAAGGCTAATTACACGTTACAGaTCTACCCGGACGAGGGACACTTCCTGCACTCAGAAGAATCCCGGCAGCACCTCAGCCAATCACTGGTCAACTTCTTCGAGGTGTGTTTCAGACCGCCGGAGATCGTGAGCGAAGAGGAGCTGGAGCAGGACCACGAGGACGACGGTTAAACACGCCCCTGACCACGCCCACAACGACTGTCCCTCAGAGCCCAGCGCAGGCCAGCTTACAGCCCAATATGCAAACTGTCCACCTCGTCCCCCCCCGTCCCCCGTCCCTCCTCCAGAGCTCCAGCATCATCAGGAGAATCACCGGTATCATCGTCGTCAGTATCGTCCGTCTGCGTCTCAGACGATTATCCTGAACATCGGCACAGACCTGAGCCAATCAGCTCGTCTCTACAGAGGAGAACGAGACGCTGAGCGAGATAAAGAGCTGAACCGctgtttcatcatcatcatcatcatcatcatcttcatcatcatcggTCCTCCAACCAAACACCCAGACGAGCGTCCTCGTGTGAACTGAGAGGAAATAATAGCACAaaacagatatacagctctggaaaaaaaaacaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186621 lncRNA upstream 73413 2025193 ~ 2028808 (+) True G137930
TU186605 lncRNA upstream 113755 1987814 ~ 1988466 (+) True G137917
TU186585 lncRNA upstream 177366 1921553 ~ 1924855 (+) True G137902
TU186500 lncRNA upstream 183810 1916147 ~ 1918411 (+) False G137831
TU186501 lncRNA upstream 183810 1916147 ~ 1918411 (+) True G137831
TU186636 lncRNA downstream 3484 2233549 ~ 2237690 (+) True G137943
TU186644 lncRNA downstream 14451 2244516 ~ 2245661 (+) True G137951
TU186653 lncRNA downstream 59027 2289092 ~ 2292464 (+) True G137960
TU186665 lncRNA downstream 120569 2350634 ~ 2371378 (+) True G137965
TU186677 lncRNA downstream 156445 2386510 ~ 2480525 (+) True G137972
XM_007229162.3 mRNA upstream 187202 1869474 ~ 1915019 (+) True LOC103042278
XM_007229163.3 mRNA upstream 241706 1855297 ~ 1860515 (+) True kdsr
XM_022677685.1 mRNA upstream 250908 1835502 ~ 1851313 (+) True LOC103042893
XM_022677778.1 mRNA upstream 285009 1810725 ~ 1817212 (+) True LOC103043726
XM_022677773.1 mRNA upstream 299902 1777225 ~ 1802319 (+) True tsc22d2
XM_022677788.1 mRNA downstream 91973 2322038 ~ 2362870 (+) True LOC103042593
XM_007250619.3 mRNA downstream 165892 2395957 ~ 2405369 (+) True LOC103040438
XM_007250620.3 mRNA downstream 165893 2395958 ~ 2405369 (+) False LOC103040438
XM_007250621.3 mRNA downstream 192843 2422908 ~ 2431028 (+) True LOC103040954
XM_007250622.3 mRNA downstream 235266 2465331 ~ 2473513 (+) True LOC103041271
TU186618 other upstream 77835 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 263704 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 463966 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 602265 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 1062295 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 1571788 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 1603190 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 1603190 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 1865951 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 1935977 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile