RNA id: XM_022670140.1


Basic Information

Item Value
RNA id XM_022670140.1
length 3270
RNA type mRNA
GC content 0.54
exon number 22
gene id LOC103029230
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2597692 ~ 2811496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGGGGGCATCTCCACGAGAGGGCTGgGAAGCGGAAGGAGCGAAGGTCTAAAAGCTCAGAGGAAGCTCGGGGGAGGAGAAATGCCATCCGGCTGAGCGGAGAATACACAGTGGAGACGGTGGTGGTGGCTGACTCAGACATGGTGCAGTACCACGGAGCTGAAGCTGCCCAGAGATTTCTACTCACTGTCATGAATATGgtgtATAACATGTTTCAGCACCAGAGTCTGGGTGTGCAGCTGAACATTCGGGTCACCAAATTGGTCCTCCTGCACTCCCGCCCAGAGAAGCTGAAGGTCGGCCATCATGGAGAGAAAGCTCTGGAGAGCTTCTGCCACTGGCAACACGAGGAATATGGAGGCGGTCGGTACCTTGGCAGCAACCATGTTCCTGGAGGTAGAGACGACCCGCCTCCTATGGACGTAGCGGTGCTGGTCACAAGAACAGATTTCTGCGTTCACAAAAACGAACCCTGCGACACTGTTGGCATCGCCTACCTGGGGGGCACCTGCAGCTCCAAGAGGAAGTGTGTGCTGGCAGAGGACAATGGACTCAACCTGGCCTTCACCATCGCCCACGAGCTTGGACATAACATGGGCATGAGCCATGACGACGACCACGCCACCTGCACTGGCCACTCCCACATTATGTCAGGGGAGTGGGTGAAAGGTCGTAACCCCAGCGACCTCTCCTGGTCCACCTGCAGCCGTGACGACCTGGAAAACTTCCTGAGGTCGAAGGCCAGTGGTTGCCTGCTGCACACGGACCCTCGGAGCCGCTACCGGGTGCGTTTGCCTGCCAAGCTGCCTGGAATGCACTACAGCGCTGATGAACAGTGTCAGATTTTGTTTGGCACCAACGCCACCTTCTGCACTGACATGGAGCACCTGATGTGTGCGGGTTTGTGGTGTCTGGTGGAAGGAGACGCTTCCTGCAAGACCAAACTGGACCCGCCTCTGGACGGCACAGAATGCGGTGCAGACAAGtggTGCAGAGCTGGTGACTGTGTCAGTAAGACGCCGATTCCCCAGCatgtggacggagactggagtCTGTGGAGTCAGTGGAGCATGTGCAGCCGAACCTGCGGCACTGGAGCTCGATTCAGACAGAGGAAGTGCGACAACCCACcGCCTGGACCTGGAGGGAGGAACTGTGTAGGGGGCAGTGTGGAGCACAAGGCGTGTGAGGGACCACCATGCTCTAAAGGAGTGCCCACCTTCAGAGACCAGCAGTGCCAGTCTCACGAGCGCCACTCTGGGAAGAAGAAGACCCAGATGTGGACAGCGGTGATCAGCGATGAGAAGCCATGTGCTCTGTTCTGTTCTCCGGTTGGCAGGGACGCCCCGGTGCTGTTGGCGGAGCGCGTACTGGACGGGACACCCTGCGGACCTTACGAGAGTGACCTGTGTGTGAACGGAAAGTGTCAGAAAATTGGCTGTGATGGCATTATCGGCTCCTCGGCTAAGGAGGACCGCTGTGGAGTGTGTAACGGCGATGGAAAGTCCTGCAAGATCATCAAAGGAGACTTCAACCACACCAGGGGAATGGTCACCCCTAGCCATTGTAGGAAGGTCTCTACGTGTGTGATGTCAAAATCCAGAGCACTTCCCAAGTGTTTCTCATgtTACATCGAGGCAGCCGTCATTCCGGTGGGAGCTCGGAGAATCAAAGTAGTAGAGGACAAGCCATCCCACAGCTTCCTTGctttaaagGACTCAAGCAAGAGATCCATAAACAACGACTGGAAGATCGAGCTGCCGGGGGAGTTCGAGCTCGCTGGCACCACAGTCCGCTACGTCCGGAGAGGACTGTGGGAAAAGATGTCTGCTAAGGGCCCCACAAAGACTCCTCTCCACCTCATGGTTCTCCTGTTCCACGACCAGTCGTACGGGATCCACTACGAGTACACAGTGTCCCTGAATCAGTCCCAGGAAAGCAGCAGCGATGTTCCGAAAGAACCCGAGTACCTGTACCTGTGGACACATAGCAGCTGGGAGAGCTGCAGCGTCCAGTGTGGAGGAGGAGAGAGAAGGACGGTGGTGTCCTGCATGAGGATTGTTAATAAAACGATGACCCTGGTGAACGACAGCTACTGTCAGCAAGAGAACCGCCCAGCGCCTCAGATCCGACgatgcaacacacacacctgccagTACAGgtgggTGGCCGGAGAGTGGGGTCAGTGTTCGGTGACCTGTGGGGCGGGGCTACAGCAGCGGGAGGTGGGCTGTGTGTATCAGCTACAGAACGGGACCTACATCACCACACGAGACCTCTACTGCATCACCTCCAAACCAGCCAGCCTGCAGCAGTGCGAGGGACGCCACTGTCTCACCGTCTGGGAGGCATCGGAGTGGTCCAAGTGCTCGTCCTCCTGTGGCCGTGGTCTGCAGTCCAGAGTGGTCCAGTGCATGCACAAAGTGACAGGTCGCCATGGAAGCGACTGCCCGATATTTCTAAAGTCCCCAGCGTACCGGCAGTGCCACCAGGGGGCGTGCAATGAAAAAGTCAACGTCAACACCATCACTTCTCCCAGGCTGGCGGCGCTGACGTATAAGTGCACAGGGGACCAGTGGACGGTGTACTGCAGGGTGATCCGGGAGAAGAACCTGTGCCAGGACATGCGCTGGTATCAACGCTGCTGCCAAACCTGCAGAGACTTTTACGCCAACACAATGCCCCATAAGAGTTAATGAGCCTGGCACTCGTCGACATGTAGCAGCTTATTTTTTTGATGTCctttttttatgtactgttttaAATAACGTGGTTTGTATTATTGTTgaagagtattgtatgtgaaaatCGAATCAGTTCGTAAAACGcagtaacaagaaaaaaaaatcgctAAAATGCACACATGTaggtttttaaagcttttaagtTTGTGACTTGAACAAAAGGGCGCAAATggtttttataacttttttttgctgtaaaccAAAGTTAACAATAATCCAAGGCAGTTGGAGAGACTTCTTTAGCCTCACGGCTTGGCTGTTGTACAGTACGTTGGCCGTTGGTGGCGTTGCGAAGAACCATTTGGCTTGGATTGATCTCTGAAAGCCACTGGTTGGCCTATAACCCCAGCACTATAAGTTTGGTATGGCCTATTTAACAGAATCAGTCCCCGTTTTCAGGATTTCTAAAAGTGGTCAATTTAAGTTTCTAAAAGTTCATATATAGGAAGGGCATATAATCTAGAACCCCAAGGCTCTTGAAGTTTTGCTATATTCCCAATAATATTAAAGAGCTGTTTGCTTTGC

Function

GO: NA

KEGG:

id description
K08631 ADAMTS17; a disintegrin and metalloproteinase with thrombospondin motifs 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53934 lncRNA upstream 98401 2498869 ~ 2499291 (+) True G39965
TU53902 lncRNA upstream 172587 2419150 ~ 2425105 (+) True G39943
TU53913 lncRNA upstream 178636 2414772 ~ 2419056 (+) True G39952
TU53906 lncRNA upstream 206130 2389916 ~ 2391562 (+) True G39946
TU53904 lncRNA upstream 207053 2389038 ~ 2390639 (+) True G39945
TU53999 lncRNA downstream 53878 2792534 ~ 2793711 (+) False LOC111192560
XR_002650014.1 lncRNA downstream 53884 2792540 ~ 2793815 (+) True LOC111192560
TU54001 lncRNA downstream 68494 2807150 ~ 2810533 (+) True G40014
TU54005 lncRNA downstream 94049 2832705 ~ 2835026 (+) True G40018
TU54018 lncRNA downstream 221202 2959858 ~ 3003170 (+) True G40030
XM_007238867.3 mRNA upstream 191304 2392115 ~ 2406388 (+) True LOC103032316
XM_007238866.3 mRNA upstream 209604 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 209604 2382061 ~ 2388088 (+) True LOC103031990
XM_022669490.1 mRNA upstream 361934 2118643 ~ 2235758 (+) True LOC111192498
XM_022669489.1 mRNA upstream 649270 1882803 ~ 1948422 (+) False mapk8ip1
XM_007237229.3 mRNA downstream 62362 2801018 ~ 2861383 (+) True kiaa1024
XM_022669496.1 mRNA downstream 247709 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA downstream 247710 2986366 ~ 3006325 (+) False zfand6
XM_015608092.2 mRNA downstream 247712 2986368 ~ 3006325 (+) False zfand6
XM_022669498.1 mRNA downstream 248483 2987139 ~ 3006325 (+) False zfand6
TU53708 other upstream 811171 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 811456 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 812599 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 813348 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 815032 1779691 ~ 1782660 (+) False muc2
TU54378 other downstream 1395854 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2569890 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3794709 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 5087867 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 7257097 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile