RNA id: TU103789


Basic Information

Item Value
RNA id TU103789
length 259
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G76970
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 113419 ~ 118770 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGCTGTATCAGATTCCTCTGTTCTCCTGCACCACATTCCTCAGAGGAGCTGCTTCTCATCAAATACAACACTTTACACATCAAAGAtcacctgttacacacacacacacacacacacacaccacacacacaccacacacacacacacacacaccacacacacaacacaccacacaccacaccacacacacttcaaaccacacataccccacaccacacacacttcaaaccacacataccccacaccacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103749 lncRNA upstream 64988 43618 ~ 48431 (+) True G76948
TU103792 lncRNA downstream 5016 123786 ~ 124792 (+) True G76972
TU103806 lncRNA downstream 50443 169213 ~ 169503 (+) True G76984
TU103816 lncRNA downstream 79101 197871 ~ 203592 (+) True G76992
TU103820 lncRNA downstream 103761 222531 ~ 232122 (+) False G76995
TU103821 lncRNA downstream 111507 230277 ~ 232122 (+) False G76995
XM_022672520.1 mRNA upstream 37534 52801 ~ 75885 (+) True apob
XM_022672523.1 mRNA downstream 44258 163028 ~ 173869 (+) True tpp1
XM_022672524.1 mRNA downstream 59636 178406 ~ 189134 (+) True degs2
XM_007237180.3 mRNA downstream 62521 181291 ~ 189134 (+) False degs2
XM_007237193.2 mRNA downstream 202537 321307 ~ 337947 (+) True disp2
XM_007237198.3 mRNA downstream 233383 352153 ~ 354980 (+) True ccdc32
TU103781 other downstream 7478 126248 ~ 133160 (+) False ldah
TU103901 other downstream 400863 519633 ~ 520590 (+) True G77059
TU104033 other downstream 512944 631714 ~ 632372 (+) True G77154
TU104123 other downstream 886359 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 1365900 1484670 ~ 1485050 (+) True G77410

Expression Profile