RNA id: TU103821


Basic Information

Item Value
RNA id TU103821
length 1786
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G76995
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 222531 ~ 232122 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaacacacccaggCAGGTGCATGCTTAGACAGTTTTAATATACCAACTACAGTCATTAAAAAACCCCTGATGAgtttcatcacacacactctcacacacacacacacacacacacacacacacacacacacacacacacaccttctctcTCAGTGCAAAAACAGGAATCATGAAGCATGAATACGGTCGTTAGgctacagacagacaggtggacACTTAGTGGATTAAAATGATTCTGTTAtttcacttcctgttactgatttaaaacatgattacaggtTATTATTCTTTAATCCAGTCTGGATATGCAgatattttgtctgttttaacttgataataatgttttttttttaataaaataataatgaaattacAGAATGCAGTTACATAATAATGCAGTGAATTATTACGATACTCAGAGAGCTGTACCTCGAACAGGACTTGTTTGCTGCGGTGCTTTCATAATcgtaaaatcattttaaaaagagcCGGATTATAAGAGCTGATCAGAGTGGAGtgatatacagtggcttgcaaaagtattcataccccttgaacttttccacattttgtcattttacaaccacaaacttcaatgtattttattaagattttaagtgatatacaaacacaaagtattgcatagtAAAAAGTgtaatgtgcaaaagtatttagcccccccccccccctcctatatcaatacttagtagagccaccatttgctgcaattacagctgtaagtgcttttggggtttgtctttACCAGCTTTGATAATCTAGAGACTTTTGAGAGATTTTTGCCCCAGTCAtatgtttcttttaacaatggactcttccataaaggccatatttgtggagtgcatgacttatgatagttgtcctgtggacagattctcctgatccacctgatctgtggatctctgcagctcctccagagtgatcatgggtctcggctgcttctctgatcagtgctctccttgctggatctgtcagtttgggggGATGGTTGGTTCATGTCTTGGTAGATTTGTTGAAACAGTTTTAGTAGAATAACTGTTTCAGGTTTATTGggtttttggatgatggattgatggaacaGAGCTGATTTGGATGATCAAAGCTTGGAAGATGTTTTTATAATCTAATCCTGCTTTAAtcttcttctccacaactttatctctgatctgTCTGCTGAGTTCTTCCTTCTTggtcatgatgctgtttgttcactagtgttcactaacaaacaaaacactgagctcttcacagaacagctgtatttatactgagactaaattacacacagctggatttactCTATTAACTCGTAAAGTTAAGACGTCTGAAGGCTGTGAATTGATTGCACTTTTATTTAGGGGctttagagtaaagggggctgaatacttttgcacttcacacttttttcagatttttatttattaaacattttaaaaaccatGAATAATTTCCGTTCCCCTTCACACTTACGCAATTCTTTGGGTTTTAAAAATCTCAATAGAATACAGTTAATTTTGTGGCTGTAAGGTggcaaaatgtggaaaaaagttcaagggttatgaacacttttgcaagccactgtaagtGGAGATCGCTTGGATCGCACATGCTGTCGctatatttggtgaaatcatGCTGCTTCACCTTTCAAAACTTACAAATGATCATAcctttgctttttaaaaagaaagaagaaaggtacaggggttggagaatgaaactgaaacacctggttttagagcacagtaattgattgtggtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103816 lncRNA upstream 26685 197871 ~ 203592 (+) True G76992
TU103806 lncRNA upstream 60774 169213 ~ 169503 (+) True G76984
TU103792 lncRNA upstream 105485 123786 ~ 124792 (+) True G76972
TU103789 lncRNA upstream 111507 113419 ~ 118770 (+) True G76970
TU103797 lncRNA downstream 6143 238265 ~ 358113 (+) False G76976
TU103839 lncRNA downstream 19888 252010 ~ 252531 (+) True G77008
TU103798 lncRNA downstream 70364 302486 ~ 358113 (+) True G76976
TU103864 lncRNA downstream 150923 383045 ~ 383284 (+) True G77033
TU103868 lncRNA downstream 175861 407983 ~ 501997 (+) False G77035
XM_022672524.1 mRNA upstream 41143 178406 ~ 189134 (+) True degs2
XM_007237180.3 mRNA upstream 41143 181291 ~ 189134 (+) False degs2
XM_022672523.1 mRNA upstream 56408 163028 ~ 173869 (+) True tpp1
XM_022672521.1 mRNA upstream 96974 84719 ~ 133303 (+) True ldah
XM_022672520.1 mRNA upstream 154392 52801 ~ 75885 (+) True apob
XM_007237193.2 mRNA downstream 89185 321307 ~ 337947 (+) True disp2
XM_007237198.3 mRNA downstream 120031 352153 ~ 354980 (+) True ccdc32
XM_022672539.1 mRNA downstream 127014 359136 ~ 369003 (+) True LOC103044274
XM_022672545.1 mRNA downstream 238391 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA downstream 239332 471454 ~ 495668 (+) True itpka
TU103782 other upstream 97117 106902 ~ 133160 (+) False ldah
TU103781 other upstream 97117 126248 ~ 133160 (+) False ldah
TU103777 other upstream 114914 84729 ~ 115363 (+) False ldah
TU103901 other downstream 287511 519633 ~ 520590 (+) True G77059
TU104033 other downstream 399592 631714 ~ 632372 (+) True G77154
TU104123 other downstream 773007 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 1252548 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1461234 1693356 ~ 1696981 (+) True G77471

Expression Profile