RNA id: TU104528


Basic Information

Item Value
RNA id TU104528
length 808
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G77510
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2026690 ~ 2030616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatcagatttttttgctcaatgtggctcagatctgattttttatgGCTGTTTTCAGATCTgttcaaatcagatctgagccactttcatatgtggaCATGCAAATGAATGTCAATGGTCAAATCATGTCAAAttcatgtgtgtttttgcttttacatattagcattagcattagcgctacgtgcttctctctagtacccacactgtatctcttggtgcagctgtgcagctatagctgcaaaaaacagcaaaagcaaaccgcctgtcatcaatgtgcagcatgtgagacgtttcaggaacagatttgagcaaaaaaatcagataagagcaatgtggcttgtaatgtcaACATAGCCTTTCACAcgctatcacacacacacaaccataacatatttaaacagcTTTCACTTTGATCCAGGAGGAAAAAATTGCACAAtatctgaataaaataatgcCTGAACATAATCTCCATTAGAGAGAAAGCCTTCAGGAGAAGTCTTCTTTTTATCAAGTGAAAGCTCGTATTTCAGCGTTTATCAGTCAATTAATGCCAGCtactgaaagaaaaaataaatcccactgttctgatgcATTTAttcacaagttcatattcatgtctCAACACAGCATTTATTAAAGCCAGTCCATCTGCTGTGACGTTAGTGAGATAGCCAGGGACGTTCCTGAGAGGAGACACATGTTGTTGGTAGACGTTCATGATGCTCATGATGTTCCAGATGTCAGCAGAGGCAGATGCTCTAGAACATTTGTATCATGCATTCTCTGGATTTGCCAACTCCCACCCACTT

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00500 Starch and sucrose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104512 lncRNA upstream 17272 1915365 ~ 2009418 (+) True LOC103033080
TU104515 lncRNA upstream 88858 1912532 ~ 1937832 (+) False LOC103033080
TU104502 lncRNA upstream 157683 1867095 ~ 1869007 (+) True G77493
TU104493 lncRNA upstream 254777 1757164 ~ 1771913 (+) True G77484
TU104469 lncRNA upstream 270624 1714565 ~ 1756066 (+) False G77464
TU104544 lncRNA downstream 30497 2061113 ~ 2066854 (+) True LOC103031311
XR_452794.3 lncRNA downstream 30564 2061180 ~ 2066701 (+) False LOC103031311
XR_001518744.2 lncRNA downstream 30606 2061222 ~ 2066701 (+) False LOC103031311
TU104557 lncRNA downstream 154253 2184869 ~ 2185952 (+) True G77531
TU104558 lncRNA downstream 159706 2190322 ~ 2190664 (+) True G77532
XM_022672585.1 mRNA upstream 20276 2000852 ~ 2006414 (+) False LOC103033080
XM_022672584.1 mRNA upstream 20276 2001945 ~ 2006414 (+) False LOC103033080
XM_022672579.1 mRNA upstream 171812 1836789 ~ 1854878 (+) True LOC107197725
XM_022672455.1 mRNA upstream 195595 1805947 ~ 1831095 (+) True LOC103033947
XM_022672578.1 mRNA upstream 274582 1734621 ~ 1752108 (+) True spint1
XM_022672588.1 mRNA downstream 56997 2087613 ~ 2146276 (+) True dnajc17
XM_022672590.1 mRNA downstream 216435 2247051 ~ 2312662 (+) True fsip1
XM_022672592.1 mRNA downstream 216435 2247051 ~ 2312662 (+) False fsip1
XM_022672591.1 mRNA downstream 216435 2247051 ~ 2294060 (+) False fsip1
XM_007257942.3 mRNA downstream 427829 2458445 ~ 2464252 (+) True LOC103031026
TU104477 other upstream 329709 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 541640 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 1017848 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 1394318 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1506100 519633 ~ 520590 (+) True G77059
TU104827 other downstream 869518 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 869518 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1385552 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1386223 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 1389311 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile