RNA id: XM_007257917.3


Basic Information

Item Value
RNA id XM_007257917.3
length 2525
RNA type mRNA
GC content 0.47
exon number 1
gene id foxg1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3482138 ~ 3484662 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTGGCTGCAGCCCGTAAAGGTtgaactcattttttttctagctTTAGTGTCTGTGGCTCCGTAATTAATTGTAGCTAGCTGTCTCTTATCGACGCGTTTTTCAAGGAACATGAAATAGTTTGTTGGGccgtgtttgtgtgagtgtgtgtgtgtatgtgtgtgtgcgcgcgcggtGTTTCTGGGCTGATTTCCCCCCTTTCCCCCTGTCGAAAGGAGTTGCCGGCGTTTAGGAGATTTTGAGGTCCAACTGTGCAGCTGGTTGTTGCTGTTCTACCTTTTTTGCGTGTGATGTTGGATATGGGAGACCGGAAAGAAGTGAAGATGATTCCCAAATCGTCGTTCAGTATAAACAGTCTGGTTCCCGAAGCCGTCCTGAGCGATAACCACCACAGGGCTGCTGGAcccgaggaggaggagaaggtgcCCCTGTCCGGAGCGCAGGACTCCAAGTCGGAGAGCGCCTGTGCTAAAAGTGAGAGCACAGACTCGACGTGCGCGGACGAGAAGGAGAAGCAGGAAGAAAAGAAGGACTCGAAGGAGGGCGAAGGGGGCGGCAAAGACAGCGAGAAGAAGAACGGCAAGTACGAGAAACCGCCGTTCAGCTACAACGCGCTCATCATGATGGCCATCCGGCAGAGTCCGGAGAAGCGGCTCACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTTCCGTACTACCGAGAGAACAAGCAGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTCAACAAATGTTTCGTTAAAGTTCCTCGGCATTACGACGACCCGGGCAAGGGCAACTACTGGATGCTCGACCCGTCCAGCGACGACGTGTTCATCGGCGGGACGACAGGAAAGCTTCGCCGAAGGTCAACCACGTCCCGGGCCAAGCTGGCGTTCAAGCGGGGTGCGCGCCTCACGTCCACCGGCCTGACGTTCATGGACCGAGCCGGCTCTCTCTACTGGCCCATGTCTCCCTTCCTCTCCCTGCACCACCCAAGGGCGAGCAGCGCGCTCAGCTACAACGGCACGTCGTCCCCGTACCCCAGTCACCCCATGTCCTACAGCACCATGCTGACCCAGAACAGCCTGAGCAACAACCACTCGTTCCCGGCTTCCAACGGCCTGAGTGTGGACAGACTCGTAAACGGGGAGTTGCCGTACGCCACGCATCACCTCACGGCGGCCGCCTTGGCCGCCTCTGTACCTTGCGGGCTTTCCGTGCCCTGCTCTGGGACGTACTCACTCAATCCGTGCTCCGTGAACCTGCTGGCTGGACAGACCGGCTACTTCTTTCCACACGTCCCGCACCCGTCCATGAGCTCGCAGTCCAGTGGGGCCATGAGCTCTCGGGCCGCCTCGTCCTCATCGCCCCAAGCGGGCTCATCTCTACCCTGTGACTCTTTACGGCCTTCTCTCCCCAGTTTCTCATCGGGACTGTCCTCGGGACTCTCTGACTACTTCACACATCAAAACCAAGGGTCAACGTCAAACCCACTTATACACTAACTAAACATCCACAGGAAGCAGACTGTAAGTGAACATTCTGCACCCATTcacactgtaatatatatatatatatatatatatatatatatatatgaaaaaggaaaaaaaaatactgggaGAGAAAGGAACATGCAAGCAGCCGAACTCCAGgtattttgtattaaattcTTCAATTCTCCTCCTTTATTTCTGTACACGAACGTCAAGTGTCGAggaactgtttttttatgatttacacTGTCAGCAACGTGCAATGtgacaagatttaaaaaaagagggtAAAGAGTAGCGCTTTTTTTCAACGGCAGTACAAATTTTACATTAGaatgtgtatttaaatagtGGTTGCAGATTTGtctaattttaaatgtaaaaaaaaaatctaaaccatCCCATGGACACCACCAGTCCTCATGTTTGCAGTATTATCACGTATCATGAGCGCACTGGTGGAGTgtgatttttcaaattaacacaaaactattttgtttctttctttttttaaataaatgtgctCTATAAGTGCAGAATACCCGTTCCGATCCATGGCTCCTTGTTATTTTGTCAGTTTCATAGATATTATTAATGGAGTTAATGCACTCACAATGCGTtcttttatgcattttaaaaagtacaatttcTTTATAGACCAAAGAATGGGTATCAAATACATTTGTTTCAGTATTCACCATCAGAAAATCAGACGGTTTTGAAGGGAACAGACTGAATGCTTTTAGCTTGTGTTTTGCAAAATTAGGCTCCTGTGTGTGGTCACCACCAGGtcccatttctttctttttttgtaattaatgaAATGTCAATTCCTGTTGTAATTATAGGTTAACTTTGCGAAGTGTAACCGTGTTGAGTAAATGCCTCATAAAAATATTGAGTGAATGTTTATGTCGTCTTTAAATTCCATGGTTGTGATTTTGTGGTCTTATGCCCGTGTTTGTCGCTTAAACTGTTAAccgaacaaaataaaaataataggtTTATGTTCATTGA

Function

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104955 lncRNA upstream 87262 3394380 ~ 3394876 (+) True G77817
TU104946 lncRNA upstream 122405 3322085 ~ 3359733 (+) False traf3
TU104928 lncRNA upstream 181467 3260466 ~ 3300671 (+) True G77804
TU104933 lncRNA upstream 184696 3220621 ~ 3297442 (+) True G77808
TU104923 lncRNA upstream 269273 3212557 ~ 3212865 (+) True G77799
TU104988 lncRNA downstream 57590 3542252 ~ 3549615 (+) True G77847
TU105124 lncRNA downstream 281118 3765780 ~ 3824274 (+) False g2e3
TU105125 lncRNA downstream 313356 3798018 ~ 3824872 (+) False g2e3
TU105133 lncRNA downstream 432142 3916804 ~ 3918653 (+) False G77961
TU105134 lncRNA downstream 432142 3916804 ~ 3921829 (+) True G77961
XM_022672460.1 mRNA upstream 6377 3396459 ~ 3475761 (+) True LOC103028182
XM_022672606.1 mRNA upstream 88980 3365742 ~ 3393158 (+) True LOC103028495
XM_022672605.1 mRNA upstream 89479 3365742 ~ 3392659 (+) False LOC103028495
XM_022672604.1 mRNA upstream 122394 3331931 ~ 3359744 (+) True traf3
XM_022672603.1 mRNA upstream 157388 3309818 ~ 3324750 (+) True rcor1
XM_022672461.1 mRNA downstream 329221 3813883 ~ 3824815 (+) True g2e3
XM_022672610.1 mRNA downstream 340966 3825628 ~ 3853124 (+) True scfd1
XM_022672611.1 mRNA downstream 368944 3853606 ~ 3858455 (+) True LOC103022404
XM_007257912.3 mRNA downstream 383891 3868553 ~ 3879318 (+) True coch
XM_007257903.3 mRNA downstream 423236 3907898 ~ 3915777 (+) True ap4s1
trnav-cac_1 other upstream 62139 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 65227 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 65898 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 504044 2900134 ~ 2978094 (+) True G77722
TU104828 other upstream 504044 2900134 ~ 2978094 (+) False G77722
TU105324 other downstream 804845 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 1967453 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 3372747 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 4110045 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 4171667 7656329 ~ 7670774 (+) False fam167b

Expression Profile