RNA id: XM_022672611.1


Basic Information

Item Value
RNA id XM_022672611.1
length 1970
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC103022404
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3853606 ~ 3858455 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgCTCGACTCTGGCTCGGCTCCTGATTGGTCAGGACGCGAGACAGTGCACGGTTGGGGgaggggctggtgacgtcatgggccttgcattgtttaatattgcgatatatatcgttgaaaaaagaacatttgcagtGTAAAATTTTTTGAATATCTTGCAGCCCTAATAAATAGGCACAGTTGTttaacatattacatattattgaGTGTGCTTTTTCTAtatgaaaggaaaggaaaggttCTTAGCTCTAGCAACATGTTTACATCTTTAGTAGTAGTCAGACTAGCTGAGATCAGAAGAGTCAGAGAGCAGAGCTGAGTAAGTGTATTAAGTGATTTGACGACAGGGATTGACGCTGTCCCAGACCATCTGAATCCTTGATGGGATTAGGAAAGTAGTACATTGTCCTGTTACACTTACGGCACATTTAGTTGCCAATTAAACGCAGGTCTGTCTTTGATCTGATGCATGTGTGGCCAGaccttcatcatcaccatcaccgaCAGCAAGCGCGTGAAGCTCAGCGCAGAGGAAACTTGAACCtggaatttaatttaaaaagtttagaattcaacctttattttaactggaATATGAATTCTCACGATTTCTCAAATgtcacaaaatattgtgttccAGAGGGAGGAGAGACGGCCATTGGTGTCTATTTGGTTTTTCTGGGCTGGCTCTCTTGGATTGGAAATGGAATTGTGATATTACTTTTGACCAAACAGTGGAAATCTCTTGAAGCACAGGACTTCTTAACACTTAATCTTGCAGTGTCTGATGCTAGTATTGCCATTTTTGGGTATTCTCGCGGAATCCTTGAAGTTTTTGATGTGTTGAAGGATGAGGGGTACCTCATACGGACCTTCTGGACTTGTAAGGTGGACGGGTTCTTGATCCTGCTCTTTGGCCTCATCAGCATCAACACGTTGACGGCCATCAGCATCATCCGCTACATCAAAGGGTGCCAGCCTCAGCACGCTCATCACATCAACAAGCGTAAGGTTGGCCTTGTCATTGCTGCTGTCTGGCTTTTCTCTTTGTTCTGGGCTGGAGCGCCACTCCTGGGCTGGGGCAGCTATAGAGcccgCAGATATGGCACGTGTGAAATTGACTGGGCCCAGGCCAGGTTCTCGGTGGCAGTCAAGCTTTACGTCATCAGCATTTTCTTCTTCAACTTCTTCGTGCCGATGTCGGTCATAGTGTTCACGTACGTGTCCATCATCCGCATGGTCAACTTCAGCCACAAGACCAGCAGAGGAGGAGATGTGAGCGAGAGGCAAAGGAAGATGGAGCGCAGCATAACACGGGTGTCCCTCTTTCTGTGTGCAGCCTTCCTGTTGGCCTGGTCCCCGTACGCAGTTATCTCCATGTGGTCCGCCTGGGGTTACCAAGTACCCCCGCTCAACGGTATCCTGGCTAGCCTCTTTGCCAAGTCAGCAAGTTTCTACAATCCTTTCATTTACGTTGGCATGAGCTCCAAGTTCCGGAAGGATCTGAAGGCTCTGTTCCCTTGCATGAGACCTGGCGCAGCTCAGAGCGCCACCCCACGACTGCCACTGGTGGCCCAGCCTGACGACGTGCAGCTCCGTCCAGAGAACTTcaaggaggatgaagaaaacCCAGACTCTGGGGTGGAGATGAGCCATAATGAAAGTACCAGCGACAGCGCTCAGGAGGGCAAACAGGAGAACCCACCTCAGGAGGACGTGCAGAATTGTCCCTTAACTGGGCCAGGGGACAAGAGTGTCCCTTCACAAGCATTCCTGAGAAAGTCCAGCGACTCGGGAAGACTGTAAAAGACTTTGCACACCTTTaacccgtgtgtgtgtgttgtttgttttagcTTGAAGCATAAATGTAGATGTCGtagatttattttacatttatatttgtacATACTCACTGTCTTTATACATATGAGggttttaattatataaaaatgtgcattaatgataataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105125 lncRNA upstream 28734 3798018 ~ 3824872 (+) False g2e3
TU105124 lncRNA upstream 29332 3765780 ~ 3824274 (+) False g2e3
TU104988 lncRNA upstream 303991 3542252 ~ 3549615 (+) True G77847
TU104955 lncRNA upstream 458730 3394380 ~ 3394876 (+) True G77817
TU104946 lncRNA upstream 493873 3322085 ~ 3359733 (+) False traf3
TU105133 lncRNA downstream 58349 3916804 ~ 3918653 (+) False G77961
TU105134 lncRNA downstream 58349 3916804 ~ 3921829 (+) True G77961
TU105259 lncRNA downstream 154295 4012750 ~ 4013009 (+) True G78053
TU105261 lncRNA downstream 173808 4032263 ~ 4032562 (+) True G78055
TU105263 lncRNA downstream 177859 4036314 ~ 4036575 (+) True G78057
XM_022672610.1 mRNA upstream 482 3825628 ~ 3853124 (+) True scfd1
XM_022672461.1 mRNA upstream 28791 3813883 ~ 3824815 (+) True g2e3
XM_007257917.3 mRNA upstream 368944 3482138 ~ 3484662 (+) True foxg1
XM_022672460.1 mRNA upstream 377845 3396459 ~ 3475761 (+) True LOC103028182
XM_022672606.1 mRNA upstream 460448 3365742 ~ 3393158 (+) True LOC103028495
XM_007257912.3 mRNA downstream 10098 3868553 ~ 3879318 (+) True coch
XM_007257903.3 mRNA downstream 49443 3907898 ~ 3915777 (+) True ap4s1
XM_007257898.3 mRNA downstream 149060 4007515 ~ 4011258 (+) True LOC103044683
XM_007258890.3 mRNA downstream 440341 4298796 ~ 4308409 (+) True klhdc1
XM_007258891.3 mRNA downstream 451862 4310317 ~ 4313788 (+) True dnaaf2
trnav-cac_1 other upstream 433607 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 436695 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 437366 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 875512 2900134 ~ 2978094 (+) True G77722
TU105324 other downstream 431052 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 1593660 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2998954 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3736252 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3797874 7656329 ~ 7670774 (+) False fam167b

Expression Profile