RNA id: TU94884


Basic Information

Item Value
RNA id TU94884
length 282
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G70317
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 420453 ~ 420734 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacaggagcatccgagcctccactactagactctgcaacagcttcatccaccaggcagtcagacttctcaacgcacagagacagaactgaacccccaccccacccaccactcacccaacacactcacacaaaactaaactgtacaccccccctttacacaaaactaaactgtacaccccccctttacactcacaagaactgaacttcacccacacacacacccagtcagcacacagaggctgatatgactttatttgctgcactcttaaaaactataaactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94883 lncRNA downstream 8627 411585 ~ 411826 (-) True G70316
TU94865 lncRNA downstream 28746 391362 ~ 391707 (-) True G70299
XR_002650221.1 lncRNA downstream 133411 283676 ~ 287042 (-) True LOC111193064
TU94801 lncRNA downstream 237040 177044 ~ 183413 (-) True G70253
TU94729 lncRNA downstream 381422 37030 ~ 39031 (-) True G70190
TU94891 lncRNA upstream 15503 436237 ~ 445526 (-) False LOC111193066
TU94889 lncRNA upstream 23079 443813 ~ 445526 (-) True LOC111193066
XR_002650224.1 lncRNA upstream 23399 444133 ~ 445529 (-) False LOC111193066
XR_002650223.1 lncRNA upstream 23399 444133 ~ 445529 (-) False LOC111193066
XR_002650222.1 lncRNA upstream 23399 444133 ~ 445529 (-) False LOC111193066
XM_022671930.1 mRNA downstream 224170 178319 ~ 196283 (-) True LOC103044579
XM_022671888.1 mRNA upstream 511283 932017 ~ 938184 (-) True LOC111193040
XM_015603201.2 mRNA upstream 554361 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA upstream 554361 975095 ~ 982581 (-) False rps5
XM_022671898.1 mRNA upstream 567712 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 589152 1009886 ~ 1035016 (-) True LOC103042850
TU95334 other upstream 2315134 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2927066 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 3348427 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3991214 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 4461436 4882170 ~ 4884488 (-) True G71235

Expression Profile