RNA id: TU94891


Basic Information

Item Value
RNA id TU94891
length 668
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC111193066
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 436237 ~ 445529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGGCAGGATGGGTGTTTTTGTCTGGTAATCTTGTAAGCATTTGGGCTAAATAAAGCTCTGTGTTAAAATATTAGTGATTTGCTTACTTTTTCTACTTTAACTGACGTGAGTTGTTTACAAACATCCAGCAAATCTTTCCCTTTTTGTCAGCCGGCTGTGGGTGGTGTAATTCCTGCGTGCCTAATTCTAATATATGGGTTGATTGCCTTTAGTTCATTGGCTGAATAATCTGACCTGGGACTATATGTAGGCCAGGTGGCTGTTACCTGGGACACACCCTCTGTGGTTCCCACCCCCCTTCCTCGGCGTGCTGCTGGGCGAGGTCTGCAGTTTGGCGTTTGGTGTGGCTGGGTGAATGCTCTCCTTTGTCTTGGGAATTTTCACAAGCGTGCGTGCTGAGGCATTTGTGAGGAGATTGCTCCGGTGGTTTATGCCACGTGCAAAGGTTTCCGTCTGTGTGTGAAGCTACGAGAAGTGTTGTGACTTTCCCGCTGTCTGCCGTGGAGAAGTGAAGCCTTGGAAGCTGGGGTGGTGGAGTACGGGGAGTGTCCAATACAGCTCtacccgtgtgtgtgtgagatcacCTGTGTCCCCCTCTTCGCGGAGGCTCCTCCCCCTGCATTAgtgctattgttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94884 lncRNA downstream 15503 420453 ~ 420734 (-) True G70317
TU94883 lncRNA downstream 24411 411585 ~ 411826 (-) True G70316
TU94865 lncRNA downstream 44530 391362 ~ 391707 (-) True G70299
XR_002650221.1 lncRNA downstream 149195 283676 ~ 287042 (-) True LOC111193064
TU94801 lncRNA downstream 252824 177044 ~ 183413 (-) True G70253
TU94898 lncRNA upstream 46875 492401 ~ 492603 (-) True G70329
TU94904 lncRNA upstream 109711 555237 ~ 559077 (-) True G70335
TU95042 lncRNA upstream 258491 704017 ~ 704490 (-) True G70438
TU95063 lncRNA upstream 333836 779362 ~ 780175 (-) True G70450
TU95049 lncRNA upstream 334801 780327 ~ 781693 (-) True G70443
XM_022671930.1 mRNA downstream 239954 178319 ~ 196283 (-) True LOC103044579
XM_022671888.1 mRNA upstream 486491 932017 ~ 938184 (-) True LOC111193040
XM_015603201.2 mRNA upstream 529569 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA upstream 529569 975095 ~ 982581 (-) False rps5
XM_022671898.1 mRNA upstream 542920 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 564360 1009886 ~ 1035016 (-) True LOC103042850
TU95334 other upstream 2290342 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2902274 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 3323635 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3966422 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 4436644 4882170 ~ 4884488 (-) True G71235

Expression Profile