RNA id: XR_002650223.1


Basic Information

Item Value
RNA id XR_002650223.1
length 1236
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC111193066
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 436237 ~ 445529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGTGGCAGGATGGGTGTTTTTGTCTGGTAATCTTGTAAGCATTTGGGCTAAATAAAGCTCTGTGTTAAAATATTAGTGATTTGCTTACTTTTTCTACTTTAACTGACGTGAGTTGTTTACAAACATCCAGCAAATCTTTCCCTTTTTGTCAGCCGGCTGTGGGTGGTGTAATTCCTGCGTGCCTAATTCTAATATATGGGTTGATTGCCTTTAGTTCATTGGCTGAATAATCTGACCTGGGACTATATGTAGGCCAGGTGGCTGTTACCTGGGACACACCCTCTGTGGTTCCCACCCCCCTTCCTCGGCGTGCTGCTGGGCGAGGTCTGCAGTTTGGCGTTTGGTGTGGCTGGGTGAATGCTCTCCTTTGTCTTGGGAATTTTCACAAGCGTGCGGTAGGCTCAGTTTGTTTTTCGCTGTTTTCTCTGATTAATCCTGGTGCTGAGTGTTTCTCCTGCTCCATTTCAGTGCTGAGGCATTTGTGAGGAGATTGCTCCGGTGGTTTATGCCACGTGCAAAGGTTTCCGTCTGTGTGTGAAGCTACGAGAAGTGTTGTGACTTTCCCGCTGTCTGCCGTGGAGAAGTGAAGCCTTGGAAGCTGGGGTGGTGGAGTACGGGGAGTGTCCAATACAGCTCtacccgtgtgtgtgtgagatcacCTGTGTCCCCCTCTTCGCGGAGGCTCCTCCCCCTGCATTAgtgctattgttttttttttgtattttcttttaggCTTTATggttcttttctattttttttctcctctgcttattattgttatattttgtgttaATTGTTTTGTATGTCCAGACTCagtcctggtgtgtgtgctgccTCCGGTGAGCTGTAGCGGActggtttgcttttttttctgaacgCGCGCTGCATGTGACTCAgcgcgctgtgtgtgtgtgtgtctgtgtgtgtgttactataCTTCCTGGGTCCTGAGTTGCGCGCTGCTGCGGGAGGGAAAGCCTGTATGGTCAGTAAgcgtgatttatttatttttatgttgccGGGCTGTGTATGGTTTAGTTGTGTTGgtataattgtttgtttgagttaatttgtttgttttcttttgtgtcTGAACAGGAGCTGGGAGTGGTGACAGGCTGCTGAGGTGTTGAAGTCTAACTGGGTGTGcttagtggtgtttgtgtgctgtgtaGTGGGGACTCCTCTCACCTGCAGTTAGCACTGGTCACAGTGTGCTCCAGCCCTGTTCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94884 lncRNA downstream 23399 420453 ~ 420734 (-) True G70317
TU94883 lncRNA downstream 32307 411585 ~ 411826 (-) True G70316
TU94865 lncRNA downstream 52426 391362 ~ 391707 (-) True G70299
XR_002650221.1 lncRNA downstream 157091 283676 ~ 287042 (-) True LOC111193064
TU94801 lncRNA downstream 260720 177044 ~ 183413 (-) True G70253
TU94898 lncRNA upstream 46872 492401 ~ 492603 (-) True G70329
TU94904 lncRNA upstream 109708 555237 ~ 559077 (-) True G70335
TU95042 lncRNA upstream 258488 704017 ~ 704490 (-) True G70438
TU95063 lncRNA upstream 333833 779362 ~ 780175 (-) True G70450
TU95049 lncRNA upstream 334798 780327 ~ 781693 (-) True G70443
XM_022671930.1 mRNA downstream 247850 178319 ~ 196283 (-) True LOC103044579
XM_022671888.1 mRNA upstream 486488 932017 ~ 938184 (-) True LOC111193040
XM_015603201.2 mRNA upstream 529566 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA upstream 529566 975095 ~ 982581 (-) False rps5
XM_022671898.1 mRNA upstream 542917 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 564357 1009886 ~ 1035016 (-) True LOC103042850
TU95334 other upstream 2290339 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2902271 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 3323632 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3966419 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 4436641 4882170 ~ 4884488 (-) True G71235

Expression Profile