RNA id: TU95208


Basic Information

Item Value
RNA id TU95208
length 1046
lncRNA type intronic
GC content 0.44
exon number 2
gene id G70574
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2184594 ~ 2185975 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctggagcagcaatagcattagctagatgctaaccgctaagctagctagcttattcactgagatcagtattatctaaattttactcgtcaggttgtaaggagcagtaaacacacactccgtgcagcgttatacagagtttcagtgctatacagagtccagagccgtgcagctccgaggctggagcagcaaatagcattagctagcttattcactgttcagagatcagtattatctaaattttacccgtcaggtgtaaggagcagtaaacacacactccgtgcagagcagcaatagcattagctagatgctaaccgcttagctagctagctttttcactgttcagagatcagtattttctaaatttagcacttttaatactgctggagcagtattattagagttagatgctaatcgctaagcgttcaccgttcagaggtgagttatcggcctgtaagtctgtgctgctttgcctggctagcattagctagatgctaagcgctaactctctcagaggtgagttttatcagcctgtaatctgcttgtttaccgtgttaaaacaagctacgggggacgaatcgctagctaatatctcactgtcttaccagaacacgcaggattactcagtgtaacgctgtcgtttaagtttgggttaactttactagtttaggtgactagctagcgtgctagcggatagctatgctaacgctggtgcagcaagccttagtggacatctggaaatctaagcttactgtaaataaactgaagcacgttactcacccaaataaacagttttcaggagaggaatctgtgtagattaatatccagcactcgtttgactttgaaatagctagatttatatatactgagacgctccaccggcaagcgaccacccccggtgggggaagggaaacatggcgccacccctgttcactttgatataggcaccctttctagtgtcacttaacgcgccttataatgcgatgcgccctatgtatggaaaaatagcagaaaataggcgttctttgatagtgcgtcttataatacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95206 lncRNA downstream 86626 2054736 ~ 2097968 (-) True G70572
TU95153 lncRNA downstream 886565 1297709 ~ 1298029 (-) True G70528
TU95151 lncRNA downstream 895474 1288873 ~ 1289120 (-) True G70526
TU95146 lncRNA downstream 916152 1267968 ~ 1268442 (-) True G70521
TU95140 lncRNA downstream 1020124 1164203 ~ 1164470 (-) True G70515
TU95212 lncRNA upstream 44516 2230491 ~ 2230944 (-) True G70578
TU95213 lncRNA upstream 51324 2237299 ~ 2237515 (-) True G70579
TU95238 lncRNA upstream 125310 2311285 ~ 2346852 (-) True G70597
TU95239 lncRNA upstream 127821 2313796 ~ 2322706 (-) True G70598
TU95244 lncRNA upstream 145321 2331296 ~ 2346826 (-) True G70602
XM_022671899.1 mRNA downstream 1149578 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1178717 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 1201991 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA downstream 1202013 975095 ~ 982581 (-) False rps5
XM_022671888.1 mRNA downstream 1246410 932017 ~ 938184 (-) True LOC111193040
XM_022671944.1 mRNA upstream 249705 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 315013 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 475536 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 475536 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 518220 2704195 ~ 2742373 (-) True tnip1
TU95334 other upstream 549893 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 1161825 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1583186 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 2225973 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2696195 4882170 ~ 4884488 (-) True G71235

Expression Profile