RNA id: XM_007228108.3


Basic Information

Item Value
RNA id XM_007228108.3
length 838
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC103035544
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12036675 ~ 12041062 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGGCCAGTGTATCACTGCCAGTGGCAAGCCTCCCTGAACCATTCCTCCATCAAGCCAGTCCCACTGCCACATCTTCTCATATAGgGGGAAAACAAAGAAACCGTCAAGATGTCTGAaaaaaaaatgacctCCAGCCGGAGGCATCAtctcaagAGTTTGATGCTCGGCATAGCTAAGGGCTTGCTTGAGAAGGAGGCTGCTCAACTTGAGGTTGACCGTGCTGCCTACATGGCAGAGAACTGCCCTGACCTGTCCATGCCTGGCTCAACACAGGAGCTGCAGgAACTGTGCAAAAAACTGCATTCAAACATTGACAAGGTTGATGAGGAGAGATATGACCTGGAGGCCAAAGTGGCAAAGTCGGACAAAGAGatTGAGGATCTGAAGATTAAGGTCATTGACCTGAAGGGCAAGTTCAAGAAGCCAGCTCTGAGGAAGGTGCGCATGTCCGCCGATCAGATGCTTCAGGCTCTGCTGGGCTCCAAGCACAAGGTGTCTCTGGATCTGAGAGCCAACCTGAAACAAGTGAAGAAGGAGGTCAAGGAGGAGGCGGCAGATGTTGGTGACTGGCGTAAGAACATTGAGGACAAGGCCGGTATGGATGGCAGGAAGAAGATGTTTGAGGGCGAGGCCTAAATTTTTGGACATTTCTTTGTTTACTCCGGGCTCCCTGCGGGCTGTGTAGTGTCTCTCCCCTTTTTGCAATAGTTACATTGTTTATGCCGCTGCCAATGCCTAATTAGTTGCATTTGTTTTCTGCAGGATATATATTGTGAAAAAGAACTTTATATGATTGCAGAGCCACTACCATTAAATTATCTTAATGAAAACCATTA

Function

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12043 TNNI2; troponin I, fast skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98410 lncRNA downstream 301829 11734144 ~ 11734846 (-) True G72974
TU98401 lncRNA downstream 303526 11694678 ~ 11733149 (-) True G72967
TU98284 lncRNA downstream 804997 11231179 ~ 11231678 (-) True G72881
TU98281 lncRNA downstream 810721 11224779 ~ 11225954 (-) True LOC111193093
TU98254 lncRNA downstream 904402 11079088 ~ 11132273 (-) True G72857
TU98475 lncRNA upstream 7564 12048626 ~ 12050542 (-) True LOC111193053
TU98496 lncRNA upstream 84474 12125536 ~ 12126823 (-) True G73030
TU98587 lncRNA upstream 153511 12194573 ~ 12196578 (-) True G73098
TU98588 lncRNA upstream 153511 12194573 ~ 12196578 (-) False G73098
TU98619 lncRNA upstream 461801 12502863 ~ 12539230 (-) True G73119
XM_007228105.2 mRNA downstream 628 12033289 ~ 12036047 (-) True LOC103034366
XM_022672136.1 mRNA downstream 40474 11957570 ~ 11996201 (-) False LOC103031193
XM_022672137.1 mRNA downstream 40474 11957570 ~ 11996201 (-) False LOC103031193
XM_022672135.1 mRNA downstream 40474 11957570 ~ 11996201 (-) True LOC103031193
XM_022672138.1 mRNA downstream 40474 11965185 ~ 11996201 (-) False LOC103031193
XM_022671913.1 mRNA upstream 7723 12048785 ~ 12051489 (-) False LOC111193053
XM_022671914.1 mRNA upstream 302413 12343475 ~ 12348986 (-) True LOC111193054
XM_007228120.2 mRNA upstream 404614 12445676 ~ 12456033 (-) False LOC103038241
XM_022672143.1 mRNA upstream 404614 12445676 ~ 12456015 (-) True LOC103038241
XM_007228118.3 mRNA upstream 407374 12448436 ~ 12456034 (-) False LOC103038241
XR_002650239.1 other downstream 260536 11767509 ~ 11776139 (-) True LOC111193095
TU98300 other downstream 491452 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other downstream 491539 11521012 ~ 11545136 (-) False LOC111193052
TU97707 other downstream 2811116 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2862366 9165878 ~ 9174309 (-) True G72449
TU98666 other upstream 523286 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 523286 12564348 ~ 12564966 (-) False fbxo31
TU98668 other upstream 523286 12564348 ~ 12564874 (-) False fbxo31
TU98709 other upstream 569772 12610834 ~ 12621356 (-) True G73172
TU99163 other upstream 2501147 14542209 ~ 14545438 (-) False LOC103025073

Expression Profile