RNA id: TU143521


Basic Information

Item Value
RNA id TU143521
length 886
lncRNA type read_through
GC content 0.42
exon number 4
gene id LOC111193565
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25458815 ~ 25570821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacatttaaacacacacaatcacacacacacacactctctctctctaatgtgtgttcttgtgttcagACGGCTGTGATCTCACACTGGATCCAAACACAGCGAGCAGAGAGCTCTCTCTGAGTGAAGAGAACAGGAGGGTGGAGAGAGgaggagaGTATCAGTCGtatcctgatcatccagagagatttgatgGGTGGGATCAGGTTCTGAGTATAGAGAGAGTTActggacgctgttactgggaggctgaGTGGAGCGGAGGAGAAGCTGATGTAGCTCTGagttataaaaccatcagcaggAAAGGATTCAGTTCAGACTCTCTGTTTGGAGAGAATGAAAAGTCCTGGAGTCTGGAGATCGATAATAACAGTTACTCTGTTCATCACAATAATAACAGCACTGatctccctcctcctccctctccctctaacagagtaggagtgtatgtggactgtcccgccggcactctgtccttctacacCATCtcctctcatacacacacaccctcacacacccaaacactcacacacctacacacattcTACACCTCATTCACTGAACCGCTCTATGCTGGGTTTTATGTTTATGATGGCTCCTCAGTGCGTCTGTGTGATATAgaatagtgtgtgtttgtttatgtgtgtgtgtgagagagatggattgtgagtgatggtgtttgtgtgaaagtgtgtatgtgcttgtgtgtgtgtgtgtgtgtgtgcaagtgagTGTGCACTTATTGAATCTTCATCATTATAATCTACAATTAAAttgattatgtaaatatattgtttatgattGAGTTTGTTATTAGTAATTAAATAGTTAtaattgtaaatatattgttaatgattgttagtttattgtttattattgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143502 lncRNA upstream 55903 25360085 ~ 25402912 (+) True G106255
XR_002650605.1 lncRNA upstream 57010 25400917 ~ 25401805 (+) True LOC103043670
TU143509 lncRNA upstream 89376 25361744 ~ 25369439 (+) False LOC111193563
TU143513 lncRNA upstream 89376 25361744 ~ 25369439 (+) False LOC111193563
XR_002650604.1 lncRNA upstream 94494 25361871 ~ 25364321 (+) False LOC111193563
TU143545 lncRNA downstream 2347 25558581 ~ 25560028 (+) True G106275
TU143565 lncRNA downstream 7360 25563594 ~ 25566426 (+) True G106289
TU143668 lncRNA downstream 153982 25710216 ~ 25710456 (+) True G106370
TU143716 lncRNA downstream 398703 25954937 ~ 25960449 (+) True G106391
TU143687 lncRNA downstream 470010 26026244 ~ 26030682 (+) True G106380
XM_022674361.1 mRNA upstream 9536 25423712 ~ 25449279 (+) True LOC103025458
XM_022674930.1 mRNA upstream 36557 25419540 ~ 25422258 (+) True LOC111193564
XM_015607967.2 mRNA upstream 72515 25382872 ~ 25386300 (+) True LOC103023109
XM_022674360.1 mRNA upstream 83983 25372806 ~ 25374832 (+) True LOC103022503
XM_007232254.3 mRNA upstream 356242 25076936 ~ 25102573 (+) True slitrk6
XM_007239760.3 mRNA downstream 183993 25740227 ~ 25759643 (+) True ube2f
XM_022674933.1 mRNA downstream 207613 25763847 ~ 26023673 (+) True LOC103038099
XM_022674393.1 mRNA downstream 519464 26075698 ~ 26078799 (+) True LOC111193484
XM_022674937.1 mRNA downstream 598183 26154417 ~ 26170123 (+) True LOC103037236
XM_022674363.1 mRNA downstream 632731 26188965 ~ 26193144 (+) True LOC103039357
TU143503 other upstream 89376 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 89376 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 1045717 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1469223 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1535044 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 2458282 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2510118 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3160368 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4224092 29780326 ~ 29780927 (+) True G107117

Expression Profile