RNA id: TU88053


Basic Information

Item Value
RNA id TU88053
length 1469
RNA type TUCP
GC content 0.50
exon number 7
gene id G65231
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19280302 ~ 19284032 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTTGAAAATTGCAtttatgtacaaaaataaagtaGATTGAGATACAGGAAGTAGAACAGAAAAGTTAGAACATTCCTCTAAACTACAAAACTGTGGCCATGAATTAACAGTACAGgttatgcaataaaataaaaacgcaAGCCTGCTCATCACAATTAGGCAGTACATTTGGTATACAAAGTAGTCTTAATGATTTTACAAACCTGCGCAACTTCTGTACACAGACATTAAAACTGCATGTTCTGTACAAAAGGAAAGAGGCATTGCTTAGAATCTGTGGATGTACTGCAGGCTTTATTACAACGATCTACAAAGTGAGGGTAAAGACAAGCACCCCCATCAACTCCTACAGTCAGACCAAGTTCtctcaaaaaagaagaaaaaaaaactaaaaacaaaaaattggtAAAAAACACGAGATTTAAAAGGAGAAAATATTGGTACACAAGTTTAAATCACTTCTGAAGACGGTTAAGTGTAAAATGTCCACCATATTCAAAGCTGTAACAACCACCATCTCACACCAGGAGACATGAACACGGCTCGGCAGGTCAGCGTGGTTTAGCTGGTATCCATCCTGGCATTGTAGGCATCTAGCTGAGCGTCCAGTTCTTCTGCCGAGAGCTGCTGTTTGTTATTGCCTCTTCCACCTCCTCCTCTACCGCGGCCTCGGAGTCCTCCACCCCGACCTCCACGGCCTCGCTGTAAACCCCCGAAACCCCCGGTTCTGTTCCTGttcattcctcctcctccaccacctcgATTCAAACCCTGCATCGGGGCTCGCCTCTGAGCGTCAATCTGTGATGTCACCAGCTGAATGTTCATTGGACGacCATCCAGTGGAACCCCATTGTACTGCTTCATAGCCTTCAGAGCGTCTGATTTTCTCTCGAAGTGAACGTCTGCGGTGCCGAGGCTCCGCCCCGACCGGTCATAATGCACCGCAGCTTTCTTCAGAGTGCCGAATTCAGCGAAGAGTTCCTGAATATCTGCGTCCGAGACGCCGAAGTCCAGATTGGACACCAGCAGTTTTCCTCCAGTCTCCACTCCAGCTCCGCCGCCGCCACCACCGCCACCTCCAGCACCGGCACTGTAGCCGTTATCGAACAGGTCATGCTGCCACTTGTCGGGGAGCTGCTTCGGCCTGCTGTACGGCGCGGGTCTGCCGCCTCTGCCGCGGCCCAGGCTCTGCCGGCTCCGCATGGGCCCCACCGCTCCTCCGCCCCGGCCTCCGAATCCTCCGGCACCGAGTCTCCCCACGCTGCCGCCGCGGCTGCTTATTCTGCTTAATAATGTCATCCAGAGACATGTCCATCTTATCCGCCATGCTGACCCTGCGCTATACTTCTCTTATACTCCGCTATATACTACACTAATACTCAGCTATACTCCTGTATACACCGCAGTATAAACTCTATACACGCTGATACCCGGATCTATCACCCGCGCGCCCCGCCGACCGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88060 lncRNA downstream 30140 19249186 ~ 19250162 (-) True G65236
TU88044 lncRNA downstream 31615 19139597 ~ 19248687 (-) True G65222
TU88035 lncRNA downstream 136192 19058448 ~ 19144110 (-) True G65213
TU88004 lncRNA downstream 371608 18901627 ~ 18908694 (-) True G65185
TU87890 lncRNA downstream 443870 18781871 ~ 18836432 (-) True G65108
TU88055 lncRNA upstream 18862 19302894 ~ 19305411 (-) True G65232
TU88058 lncRNA upstream 21955 19305987 ~ 19370708 (-) False cdr2l
TU88094 lncRNA upstream 94682 19378714 ~ 19384419 (-) True G65251
TU88101 lncRNA upstream 118312 19402344 ~ 19426200 (-) True G65256
TU88113 lncRNA upstream 226768 19510800 ~ 19574509 (-) True G65267
XM_022671426.1 mRNA downstream 158842 19111133 ~ 19121460 (-) True LOC103035518
XM_007242359.3 mRNA downstream 561672 18717502 ~ 18718630 (-) True LOC103035404
XM_022671437.1 mRNA downstream 630001 18638307 ~ 18650301 (-) False LOC111192971
XM_022671436.1 mRNA downstream 630003 18638307 ~ 18650299 (-) False LOC111192971
XM_022671435.1 mRNA downstream 630004 18638307 ~ 18650298 (-) True LOC111192971
XM_022671457.1 mRNA upstream 21955 19305987 ~ 19319417 (-) True cdr2l
XM_022671463.1 mRNA upstream 125266 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 316216 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 316216 19600248 ~ 19605718 (-) False ndufb2
XM_007232709.3 mRNA upstream 381527 19665559 ~ 19714443 (-) True lhfpl3
TU88002 other downstream 256644 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 360780 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 629959 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 1349132 17928507 ~ 17931170 (-) True G64886
TU87275 other downstream 1682757 17586845 ~ 17597545 (-) False LOC111192911
TU88123 other upstream 316182 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 513647 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 2345926 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 2346089 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 3006653 22290685 ~ 22291682 (-) True G66081

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU584195 True 1920 lncRNA 0.39 3 CI01000351 657086 ~ 659209 (-)