RNA id: TU88058


Basic Information

Item Value
RNA id TU88058
length 458
lncRNA type sense_over
GC content 0.36
exon number 2
gene id cdr2l
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19305987 ~ 19370708 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTCATTTTACCTGTATGACGTAGTGTAAAATGATATGAATGTTTATCTGGTTAAATTTAGCTATGATGTCACTCCAACTCCAGCATTTGAATTCTGATGTAAACAGAACccaacatttaataataactataaaaatTCAGAAAAGCtcattaaaagttaattttactgcAGTGCACAGTGGCTATAGCTAGATTAGCATACTGTTGCTGCATCTCAGATCAGGAAGCGAGTTATCAGAGTTCAGGTCTTTGGTTGTTCATGTTGGTTTGAGTTGTGTTTCCAGTTCATTGTTACTCTTACTGGAAATTAACTGGGCGAGTTCTGAAAAGATACAGCAGTTCTCTGCTGAAAATTTCCTCTCTTTTCACACTGTATCTGAATCTGCACGACTGTGTTTAACTACGCCTCACTTCTGTACTCGGATCTTTCCAATATTAAAGACGCTTTGCTTATAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88055 lncRNA downstream 576 19302894 ~ 19305411 (-) True G65232
TU88060 lncRNA downstream 55825 19249186 ~ 19250162 (-) True G65236
TU88044 lncRNA downstream 57300 19139597 ~ 19248687 (-) True G65222
TU88035 lncRNA downstream 161877 19058448 ~ 19144110 (-) True G65213
TU88004 lncRNA downstream 397293 18901627 ~ 18908694 (-) True G65185
TU88094 lncRNA upstream 8006 19378714 ~ 19384419 (-) True G65251
TU88101 lncRNA upstream 31636 19402344 ~ 19426200 (-) True G65256
TU88113 lncRNA upstream 140092 19510800 ~ 19574509 (-) True G65267
TU88114 lncRNA upstream 140187 19510895 ~ 19511179 (-) False G65267
TU88118 lncRNA upstream 209419 19580127 ~ 19588458 (-) True G65271
XM_022671426.1 mRNA downstream 184527 19111133 ~ 19121460 (-) True LOC103035518
XM_007242359.3 mRNA downstream 587357 18717502 ~ 18718630 (-) True LOC103035404
XM_022671437.1 mRNA downstream 655686 18638307 ~ 18650301 (-) False LOC111192971
XM_022671463.1 mRNA upstream 38590 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 229540 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 229540 19600248 ~ 19605718 (-) False ndufb2
XM_007232709.3 mRNA upstream 294851 19665559 ~ 19714443 (-) True lhfpl3
XM_007232707.3 mRNA upstream 362047 19732755 ~ 19738419 (-) True guca1a
TU88053 other downstream 21955 19280302 ~ 19284032 (-) True G65231
TU88002 other downstream 282329 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 386465 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 655644 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 1374817 17928507 ~ 17931170 (-) True G64886
TU88123 other upstream 229506 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 426971 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 2259250 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 2259413 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 2919977 22290685 ~ 22291682 (-) True G66081

Expression Profile