RNA id: TU88060


Basic Information

Item Value
RNA id TU88060
length 362
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G65236
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19249186 ~ 19250162 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCTCCATTATCTCTTCCTCTCCATTATCTATACTTCTCCATTATCTCTACCTCTCCATTATCTATACTTCTCCATTATCTCTACCTCTCCATTATCTATACTTCTCCATTATCTCTACCTCTCCATTATCTATACTTCTCCATTATCTCTACCTCTCCATTATCTCTACCGCTCCATTATCTCTACTTCTCCATTATCTCTTCCTCTCCATTATCTATACTTctccattatctctctgtacagtacttgttctgttgtgtgtttatttgggttcCTCTAACTGAGTCTCGGTTCCTGATGTTCCTCCTCTCAGTCTGAGGAAGTTTCTCCTCCCGCTGCAGGACTGTTATCACTGTTACT

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88044 lncRNA downstream 499 19139597 ~ 19248687 (-) True G65222
TU88035 lncRNA downstream 105076 19058448 ~ 19144110 (-) True G65213
TU88004 lncRNA downstream 340492 18901627 ~ 18908694 (-) True G65185
TU87890 lncRNA downstream 412754 18781871 ~ 18836432 (-) True G65108
TU87893 lncRNA downstream 413750 18833847 ~ 18835436 (-) True G65111
TU88055 lncRNA upstream 52732 19302894 ~ 19305411 (-) True G65232
TU88058 lncRNA upstream 55825 19305987 ~ 19370708 (-) False cdr2l
TU88094 lncRNA upstream 128552 19378714 ~ 19384419 (-) True G65251
TU88101 lncRNA upstream 152182 19402344 ~ 19426200 (-) True G65256
TU88113 lncRNA upstream 260638 19510800 ~ 19574509 (-) True G65267
XM_022671426.1 mRNA downstream 127726 19111133 ~ 19121460 (-) True LOC103035518
XM_007242359.3 mRNA downstream 530556 18717502 ~ 18718630 (-) True LOC103035404
XM_022671437.1 mRNA downstream 598885 18638307 ~ 18650301 (-) False LOC111192971
XM_022671457.1 mRNA upstream 55825 19305987 ~ 19319417 (-) True cdr2l
XM_022671463.1 mRNA upstream 159136 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 350086 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 350086 19600248 ~ 19605718 (-) False ndufb2
XM_007232709.3 mRNA upstream 415397 19665559 ~ 19714443 (-) True lhfpl3
TU88002 other downstream 225528 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 329664 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 598843 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 1318016 17928507 ~ 17931170 (-) True G64886
TU87257 other downstream 1651641 17591160 ~ 17597545 (-) False LOC111192911
TU88053 other upstream 30140 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 350052 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 547517 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 2379796 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 2379959 21630121 ~ 21684828 (-) False G65803

Expression Profile