RNA id: TU88114



Basic Information


Item Value
RNA id TU88114
length 212
lncRNA type intronic
GC content 0.38
exon number 2
gene id G65267
representative False

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19510800 ~ 19574509 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


acacagaaacactgaataccacagaaacactgaataccacagaaacactgaataccacagaaacactatataccacagaaacactgaataccacagaaacactgaataccacagaaacactgaataccacagaaacactatataccacagaaacactgaataccacagaaacactgaataccacagaaacactgaataccacagaaacactg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88101 lncRNA downstream 84695 19402344 ~ 19426200 (-) True G65256
TU88094 lncRNA downstream 126476 19378714 ~ 19384419 (-) True G65251
TU88058 lncRNA downstream 140187 19305987 ~ 19370708 (-) False cdr2l
TU88055 lncRNA downstream 205484 19302894 ~ 19305411 (-) True G65232
TU88060 lncRNA downstream 260733 19249186 ~ 19250162 (-) True G65236
TU88118 lncRNA upstream 68948 19580127 ~ 19588458 (-) True G65271
TU88121 lncRNA upstream 81115 19592294 ~ 19593113 (-) True G65273
TU88127 lncRNA upstream 95111 19606290 ~ 19606501 (-) True G65279
TU88124 lncRNA upstream 98275 19609454 ~ 19610489 (-) True G65276
TU88125 lncRNA upstream 99756 19610935 ~ 19611878 (-) True G65277
XM_022671457.1 mRNA downstream 191478 19305987 ~ 19319417 (-) True cdr2l
XM_022671426.1 mRNA downstream 389435 19111133 ~ 19121460 (-) True LOC103035518
XM_007242359.3 mRNA downstream 792265 18717502 ~ 18718630 (-) True LOC103035404
XM_022671436.1 mRNA downstream 860596 18638307 ~ 18650299 (-) False LOC111192971
XM_007232715.3 mRNA upstream 89069 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 89069 19600248 ~ 19605718 (-) False ndufb2
XM_007232709.3 mRNA upstream 154380 19665559 ~ 19714443 (-) True lhfpl3
XM_007232707.3 mRNA upstream 221576 19732755 ~ 19738419 (-) True guca1a
XM_015601150.2 mRNA upstream 283975 19795154 ~ 19799583 (-) True llph
TU88053 other downstream 226863 19280302 ~ 19284032 (-) True G65231
TU88002 other downstream 487237 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 591373 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 860552 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 1579725 17928507 ~ 17931170 (-) True G64886
TU88123 other upstream 89035 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 286500 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 2118779 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 2118942 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 2779506 22290685 ~ 22291682 (-) True G66081

Expression Profile