RNA id: TU88118


Basic Information

Item Value
RNA id TU88118
length 747
lncRNA type inter_gene
GC content 0.50
exon number 6
gene id G65271
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19580127 ~ 19588458 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCTAGCAGGTTCTTGGCCACGTACCAGGAGATGGCCTCGAAATAAGGAAATTTAAAAAGGTCTGGAGTCTTCAGCCTCCGCTCCATCtcataacacCTGAGCTGCATGCCTATGTTCAGGTTGTGTAAGAAGTTCCCACCGAAAGCCATGCAGTCCTGAGAGGTGAGCACAGCATGGATCCAGCCTGTAGGCAGAAGTACAGTGGTCCCCTGTTTCACCACACACTTATAGCACTTCTCCACCTTCTCCCCGAAGAACACTTCGCTCTGATTGGGCGACGAGCTCCAAGACTCATATAGTGCAAGGTTAGCCTTAGTTGGCTCGATCAAGTAGAAAATCTTCTCCCCCCAGAGAACGTGGTACCACACTGAAGTTCCTCCGAAGTCGATGTGGAAGTCTGTGTAACTGTTCTTTACCCCCATCAGGCAGTACTTCTGCACAAATGGTTTAGGGAAGAAAGAGTCATCCGGCCAGTAATTCTCCACCCAGGACATTTTACGAGCGATATCTGGAACCTCCACCAGCTCTGCCATCTTAGTATCTGAGAACTCCAGGCTGATGAGGTTCAGCACCTTGGGCCGCTCTGGCTGATAATAATACTTCACAAACTCACTCAGCTTCATCTTACTGTCTGCCTGTCTGGCTACGTCAATCACATCGATGACTTTATTCCCacCCACATACTGCTCCACGTCTGTGACAGAGAAGGACAGCGGGGGCAGTTTGAGCCCCAGTCCTTCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88113 lncRNA downstream 5618 19510800 ~ 19574509 (-) True G65267
TU88114 lncRNA downstream 68948 19510895 ~ 19511179 (-) False G65267
TU88101 lncRNA downstream 153927 19402344 ~ 19426200 (-) True G65256
TU88094 lncRNA downstream 195708 19378714 ~ 19384419 (-) True G65251
TU88058 lncRNA downstream 209419 19305987 ~ 19370708 (-) False cdr2l
TU88121 lncRNA upstream 3836 19592294 ~ 19593113 (-) True G65273
TU88127 lncRNA upstream 17832 19606290 ~ 19606501 (-) True G65279
TU88124 lncRNA upstream 20996 19609454 ~ 19610489 (-) True G65276
TU88125 lncRNA upstream 22477 19610935 ~ 19611878 (-) True G65277
TU88204 lncRNA upstream 81089 19669547 ~ 19672117 (-) True G65339
XM_022671463.1 mRNA downstream 64744 19409298 ~ 19515383 (-) True sema3c
XM_022671457.1 mRNA downstream 260710 19305987 ~ 19319417 (-) True cdr2l
XM_022671426.1 mRNA downstream 458667 19111133 ~ 19121460 (-) True LOC103035518
XM_007242359.3 mRNA downstream 861497 18717502 ~ 18718630 (-) True LOC103035404
XM_022671436.1 mRNA downstream 929828 18638307 ~ 18650299 (-) False LOC111192971
XM_007232715.3 mRNA upstream 11790 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 11790 19600248 ~ 19605718 (-) False ndufb2
XM_007232709.3 mRNA upstream 77101 19665559 ~ 19714443 (-) True lhfpl3
XM_007232707.3 mRNA upstream 144297 19732755 ~ 19738419 (-) True guca1a
XM_015601150.2 mRNA upstream 206696 19795154 ~ 19799583 (-) True llph
TU88053 other downstream 296095 19280302 ~ 19284032 (-) True G65231
TU88002 other downstream 556469 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 660605 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 929784 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 1648957 17928507 ~ 17931170 (-) True G64886
TU88123 other upstream 11756 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 209221 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 2041500 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 2041663 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 2702227 22290685 ~ 22291682 (-) True G66081

Expression Profile