RNA id: XM_022671512.1


Basic Information

Item Value
RNA id XM_022671512.1
length 333
RNA type mRNA
GC content 0.45
exon number 3
gene id ost4
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21545418 ~ 21574199 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCGTTTAACAGCAGAAATGAGAGGCTGaggaggagaatacagggagagggagCTGTGTCGAGGTTCCCTGTGCGATATGCGTCTCCAGAAGCTGATCTGCATGGTGACAGACGTGCAGCTGGCTATTTTCGCCAACATGCTTGGAGTCTCCCTCTTCCTGTTGGTGGTTCTGTACCACTACGTAGCTGTGAACAATCCCAAGAAAATCGAGTGATTTTCCTACGGAGAAAACTGCtaagGGATCACAGGGACCACTGGTAGAaacagaaagaggaaaacatcatctgtaaatgtattttctaaaataaatgttaattcatttgtaaatgaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88736 lncRNA downstream 8219 21557324 ~ 21560015 (-) True G65729
TU88737 lncRNA downstream 8219 21557324 ~ 21560015 (-) False G65729
TU88717 lncRNA downstream 9643 21535402 ~ 21558591 (-) True G65713
TU88729 lncRNA downstream 17867 21549684 ~ 21550367 (-) True G65724
TU88721 lncRNA downstream 23775 21540998 ~ 21544459 (-) True G65717
TU88744 lncRNA upstream 1964 21576157 ~ 21576521 (-) True G65735
TU88811 lncRNA upstream 14173 21588366 ~ 21589265 (-) True G65791
TU88815 lncRNA upstream 25296 21599489 ~ 21599699 (-) True G65795
TU88819 lncRNA upstream 37901 21612094 ~ 21612332 (-) True G65799
TU88821 lncRNA upstream 51287 21625480 ~ 21625679 (-) True G65801
XM_022671185.1 mRNA downstream 181775 21374232 ~ 21386459 (-) True LOC103044186
XM_022671501.1 mRNA downstream 211726 20983152 ~ 21356508 (-) True nav3
XM_022671500.1 mRNA downstream 288370 20983152 ~ 21279864 (-) False nav3
XM_022671499.1 mRNA downstream 414587 20983152 ~ 21153647 (-) False nav3
XM_022671497.1 mRNA downstream 414587 20983152 ~ 21153647 (-) False nav3
XM_022671521.1 mRNA upstream 235092 21809285 ~ 21818148 (-) False mrps10
XM_022671520.1 mRNA upstream 235092 21809285 ~ 21818147 (-) True mrps10
XM_022671524.1 mRNA upstream 249703 21823896 ~ 21877702 (-) False LOC103040407
XM_022671523.1 mRNA upstream 249703 21823896 ~ 21877702 (-) False LOC103040407
XM_022671522.1 mRNA upstream 249703 21823896 ~ 21877702 (-) True LOC103040407
TU88246 other downstream 1768632 19797679 ~ 19799602 (-) False llph
TU88123 other downstream 1962552 19600214 ~ 19605682 (-) False ndufb2
TU88053 other downstream 2284202 19280302 ~ 19284032 (-) True G65231
TU88002 other downstream 2544576 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 2648712 18898185 ~ 18919522 (-) False G65184
TU88823 other upstream 55765 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 55928 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 716492 22290685 ~ 22291682 (-) True G66081
TU89874 other upstream 2933641 24507834 ~ 24508281 (-) True G66619
TU89906 other upstream 3085831 24660024 ~ 24661902 (-) True G66642

Expression Profile