RNA id: TU89155



Basic Information


Item Value
RNA id TU89155
length 720
RNA type TUCP
GC content 0.41
exon number 3
gene id G66081
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22290685 ~ 22291682 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ctAGTTTCACTGAAAAAGCTACAGAAAGAGTAACTGTGTAGTATTCTTGCCAAATAGTTAAGTCAACAGTTTGATTTTGAGGAATACATTTCCACCGAACCCTAGTCGTTTATACTTAGACAACACCAGAGGCTTTTGTATGACAAgccttttaaaagtgtttgtccATGAAAGAGACAACcttattatattgttttctgCTAATTCCATCATCACCAAGTCTGAAAGCACAGTGAAAGTTTAGCCTGGTTTGGTAACAATtttgaaaaatacagaaaaaaagacctGCTTGAGCAATTCAATGTCCTCCATGTACTTTTTGGCAGCCAGGTTAGCTGCCTCTGTCTGGGCATGAAGAGCTTTGCTGGTGTCTGTAACCTCTGCCAGCTGATTTATCAGCATGATCACCCGGCGCAAGACCAGCCACAAGAAGAGGGAGAAGCCAGAGATATAGAGATTCCTCTGGGCTCTGAAAAGCTTCATATGCAAGTGGTCAACCATGTTAGGTGTCATTTTGGCTTCTTTGCTGGGTTCAGCTCCAGAGTATTTTCTAACCTCCCTTACAGCAtccagaaaaagaacaataaggatGATTATCATTGCCAGGAATCCCTTGTTCCAGAATCGAGCAATGCTGCTCCACATGTTCAGTTTGAATATAGATTGCCATCTGCACAGAACAGcaggacacaaaaaaacatatttgagaATGTGATGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89121 lncRNA downstream 11271 22279097 ~ 22279414 (-) True G66052
TU89076 lncRNA downstream 128285 22161671 ~ 22162400 (-) True G66022
TU89057 lncRNA downstream 159092 22131088 ~ 22131593 (-) True G66004
TU89008 lncRNA downstream 324989 21964958 ~ 21965696 (-) True G65963
TU88995 lncRNA downstream 329579 21959297 ~ 21961106 (-) True G65950
TU89154 lncRNA upstream 1415 22293097 ~ 22298282 (-) True G66080
TU89147 lncRNA upstream 7799 22299481 ~ 22361569 (-) True G66074
TU89158 lncRNA upstream 19785 22311467 ~ 22313798 (-) True G66084
TU89159 lncRNA upstream 28499 22320181 ~ 22321222 (-) True G66085
TU89188 lncRNA upstream 115857 22407539 ~ 22407750 (-) True G66113
XM_022671527.1 mRNA downstream 17587 22248887 ~ 22273098 (-) True cog5
XM_022671154.1 mRNA downstream 300615 21989255 ~ 21990070 (-) True LOC111192879
XM_007237356.3 mRNA downstream 320043 21965977 ~ 21970642 (-) True LOC103040999
XM_022671524.1 mRNA downstream 412983 21823896 ~ 21877702 (-) False LOC103040407
XM_022671523.1 mRNA downstream 412983 21823896 ~ 21877702 (-) False LOC103040407
XM_007238161.3 mRNA upstream 13523 22305205 ~ 22352512 (-) True LOC103043373
XM_022671529.1 mRNA upstream 23801 22315483 ~ 22352523 (-) False LOC103043373
XM_022671531.1 mRNA upstream 71472 22363154 ~ 22401341 (-) False pde3a
XM_022671530.1 mRNA upstream 71472 22363154 ~ 22401341 (-) True pde3a
XM_007256036.3 mRNA upstream 619505 22911187 ~ 22930186 (-) True ada2
TU88823 other downstream 605857 21629958 ~ 21684828 (-) True G65803
TU88824 other downstream 605857 21630121 ~ 21684828 (-) False G65803
TU88246 other downstream 2491083 19797679 ~ 19799602 (-) False llph
TU88123 other downstream 2685003 19600214 ~ 19605682 (-) False ndufb2
TU88053 other downstream 3006653 19280302 ~ 19284032 (-) True G65231
TU89874 other upstream 2216152 24507834 ~ 24508281 (-) True G66619
TU89906 other upstream 2368342 24660024 ~ 24661902 (-) True G66642
TU90658 other upstream 5829580 28121262 ~ 28132779 (-) False LOC103041081
TU90659 other upstream 5829580 28121262 ~ 28132779 (-) True LOC103041081
TU90660 other upstream 5829580 28121262 ~ 28132779 (-) False LOC103041081

Expression Profile