RNA id: TU90658


Basic Information

Item Value
RNA id TU90658
length 1998
RNA type TUCP
GC content 0.43
exon number 9
gene id LOC103041081
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 28121260 ~ 28132788 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCTCGGAGCTTTATTAGGAGCGATCAGCGAATGAGGAGACAGAGGAGCTGCGCTCATCTCCACCTTTAAATCCGACCTGGGTCCCTCTTTACCTCTCTTAACTGAATCTAACTAAAGCGAGCTTGATTCAATCTTAAGTACTGAACAAAAGCTGCAGAAAATGGACACAGTTTCTGAGACAATAGGAAGGGAAAAGTTGCGAGCTGGCAGCGCTAAAGGTACGAACCCTTTTTGTCAGTGGCCTGCCTGTAGACATCAAGCCACGGGAGCTGTACCTGCTGTTCAGGCCATTCAAGGGATATGAAGGGTCTCTCATTAAACTAACCTCAAAGCAGCCTGTTGGCTTTGTTACCTTTGACAGCAGgtctggagctgaagcagcgaaAAACGCGTTAAATGGAATTCGCTTTGACCCGGAGAATCCTCAGACGCTGCGCCTGGAGTTTGCCAAGGCTAACACCAAGATGGCAAAGAGTAAGCTGATGGCTACACCCAACCCCTCAAGCCTACACCCAGCTCTTGGGGCTCACTTCATTGCCCGGGACCCATATGACCTGACTGGAGCAGCACTAATCCCAGCATCTCCAGAGGCATGGGCCCCGTACCCACTCTACACCACTGAGCTGACCCCTGGCCTGCCTCACGCAGCCTTCACCTACCCTGCAGCCGCTGCAGCCGCCGCTGCCCTGCACGCCCAGGTGAGGGACCAACCGATGCGCTGGTACCCCTCGCCATCCGACACCTCACAGCCCGGATGGAAATCCCGCCAGTTCTGTTAAGTATTTAAAGCCCACCAGTACCTGAaggtttttctttcttcttttcctccctctctccttccgTGTGGAGCAAGGCGTGTACTGGGCTTGACGTTTAATTTAATCAGGTTTATTTAACAGATGCAAGGAGCATTTAAAggacttattttttcttttttctttttttcctggaGAAAACTCTTCTGTAAAAGGACTCTAAAAGAACAGGACAAGACAGGATGCTTATCTACAGCTGGGGCCTCCTGGGCTAATGGTACAGTCTCTGCGATTTCAAAGCCAAACATGTGACGAGCTGATCATGTGCAACTTTAAACATTCTAGCTGCTCTCTTATTggttgagtgagtgtgtgaatgtctgcatatgtgtaggtgtgtgttcggggggaTGGGGACAATCATTATGCATGTTTGAGTATAGTATATGGCATGAAATATAGAATGCAAAGCTCTGTATGTTTTggtttctctttcttctttgtgTTGCTGTTGTGAGAAGACCTGCTTAAccccttttattgtttttctctgtaatccGCTAGTCCTGCTTCTGTGAAGATCTTTGCGCTTGACTTGCTTTTTACATGTATGGTGTTATTTGCAAGGTAGAGGCCTACATCTTGTTACTATGGagtcttgttttgtttgtgtgttcagAATGAAATTCCACATGCACTGGGTTTATTTTGGTTCTTCTTTAAATCCTTTATGATCTTGACTGTAAACTCGTCCGAGGTGGACGAGTCCTTCCGAGACCCTTTTCCTTCAGGCCTCGAATGCATCGCCTTCGAACCCGATCTGCCAAAATACCggtatctgtgtttgtttagagtatatttgaacaaaaaaagaagtacaaatatttttgtacatttgtgtaataatggatatttatgcatttttttttgtgaaattaaaTAAGTATATCTGTATAAGATGTTAAGTCTTCCCTTGTGTTATTTTGGTATTATTTTAATAGCTGTTGATTCTGTCTATATTCTGTTTAACGTAGAGAAgtgcaatttttgttttttgttttgtttagtttttgtttttgcttggtGTTGAATACTGAACTACACAGATTGTGGCAGAACTGCTAGTTTAAATGGACTGCTAACATGAGATTGctgtaaaaagaataaataaataaaaaaattgggaaatgattttttttttccttccagaATGTGAAACTGGAAAATAAACAGGTTGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90651 lncRNA downstream 85342 28032721 ~ 28035920 (-) False tmem258
TU90626 lncRNA downstream 227478 27893508 ~ 27893784 (-) True G67228
TU90546 lncRNA downstream 435822 27685026 ~ 27685440 (-) True G67165
TU90535 lncRNA downstream 529494 27591297 ~ 27591768 (-) True G67154
TU90532 lncRNA downstream 638420 27482499 ~ 27482842 (-) True G67151
TU90672 lncRNA upstream 84092 28216871 ~ 28220848 (-) True G67254
TU90726 lncRNA upstream 267005 28399784 ~ 28466660 (-) True G67294
TU90739 lncRNA upstream 311108 28443887 ~ 28457328 (-) True G67300
TU90749 lncRNA upstream 520180 28652959 ~ 28653504 (-) True G67310
TU90762 lncRNA upstream 593804 28726583 ~ 28729171 (-) True G67321
XM_007235079.3 mRNA downstream 12231 28037860 ~ 28109031 (-) False ap3b2
XM_007235078.3 mRNA downstream 12231 28037860 ~ 28109031 (-) False ap3b2
XM_007235077.3 mRNA downstream 12231 28037860 ~ 28109031 (-) False ap3b2
XM_007235081.3 mRNA downstream 12232 28037860 ~ 28109030 (-) False ap3b2
XM_007235083.3 mRNA downstream 12232 28037860 ~ 28109030 (-) False ap3b2
XM_022671630.1 mRNA upstream 90327 28223106 ~ 28229332 (-) True psma4
XM_007235065.3 mRNA upstream 350349 28483128 ~ 28580685 (-) False chrm2
XM_022671631.1 mRNA upstream 350349 28483128 ~ 28580685 (-) True chrm2
XM_007235056.3 mRNA upstream 1008232 29141011 ~ 29151724 (-) True fbxo7
XM_007235052.3 mRNA upstream 1044893 29177672 ~ 29199119 (-) True xpot
TU89906 other downstream 3459360 24660024 ~ 24661902 (-) True G66642
TU89874 other downstream 3612981 24507834 ~ 24508281 (-) True G66619
TU89155 other downstream 5829580 22290685 ~ 22291682 (-) True G66081
TU88823 other downstream 6436434 21629958 ~ 21684828 (-) True G65803
TU88824 other downstream 6436434 21630121 ~ 21684828 (-) False G65803
XR_002650206.1 other upstream 1310577 29443356 ~ 29467227 (-) False fuk
TU91366 other upstream 2465616 30598395 ~ 30600908 (-) True atp6v1f
TU91422 other upstream 2669931 30802710 ~ 30805567 (-) True G67755
TU91536 other upstream 2843098 30975877 ~ 30992883 (-) True G67830
TU91559 other upstream 2948015 31080794 ~ 31091017 (-) False tmem60

Expression Profile