RNA id: XM_007232709.3


Basic Information

Item Value
RNA id XM_007232709.3
length 2098
RNA type mRNA
GC content 0.48
exon number 4
gene id lhfpl3
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19665559 ~ 19714443 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgcgtgtgtgtatgtgtgtgtgtgctgtatgcTCTCCCTGTCATCTCGGCGCGCGTGCTTCAGTGCTTCAGTCCAGGACAcattttagagagagagagagagacagagagacagagaaacataGAGGTGTATATATACAGACAGAGGTAGAGCGAgttagagagatagacagagggagagagagagacggtgtGTGTTTCTGACCAGAGATGGGCTCCAGAGGCTGCAGAAGCTCATCATCTTCTTCATTGCTGCAGCCTGGAAGATGCTATTTTTCACCACGTGAATAATGAATGGGGCACTCATGGCTGACCACTCTgcattttaatgctgttttcagGGATTCATCTGTCATTTTTGGCTGAGATGAGAGCAGGCTGCTGTGGGAGCGGTGGTGCTTTGCTGTTGAAGAATCTGTAGAGCAACAAGGATGCAGGATTTCTGGACATGATATGAGATGTTTGAGGCATGATGGTGTGAATGAGAAAACAAACACCAACCCCTTGATTTATTTGCAACCGATaagcaaagaaaagaagaaagaaaacaacCCGAATCAAAATCAGTTAATGCACCGAATCATACTAGTGACACCTGATTATACCACAAGCTTCCACGACACGATTCCACCAAGTCTACCCCAGCTTCTGGTGCTGTGCAGCTCCAGCTCCACGAGGTCTGCATCCAGGCGATGGTCCCTGGAACACCAGCAGCCATGCTCCCCGCTTCAGAAGCCGCTAAAATCTACCAGACCAACTACGTGAGGAACTCCCGAGCCATTGGAGTTCTCTGGGCCATCTTCACCATTCTCTTCGCCATCGTCAACGTGGTCTGCTTCATCCAGCCCTACTGGATTGGCGACGGGGTGGACACCCCCCAGGCCGGCTACTTCGGCCTCTTCCACTACTGCATCGGAAACGGACTGTCACGAGACCTCAAGTGCTACGGCAGCTTCACCAACTTCAGCTCCATCCCTTCGGGTGCCTTCAAGGCTGCTTCCTTCTTCATCTGCACCTCTATGGTCCTGGTGCTCACCTGCATCGCCTGCTTCgccctcttcttcttctgcagcACTGCCACCGTCTACAAGATCTGCGGGTGGATGCAGCTGGCGGCAGgtacGTGTCTAGTGTTGGGATGTCTGATCTATCCGGACGGTTGGGATGCGGATGAGGTGAAGAGGATGTGCGGGGAGCAGACGGATAAGTACACTATTGGAGCGTGCTCAGTGCGCTGGGCCTACATCTTGGCAATCATGGGCATCCTGGACGCCCTCATCCTCTCCTTCCTCGCATTCGTCCTGGGCAACCGGCAGGATGGGCTCATGGGGGAGGAGCTTCTGGGAGACAGTTGATTCTGCCCAGTAAAGGAACCCGATTTAACGTTAAGTGATCCAGCTTATCATCCTATGCGTGGGTGTTTGGAGTGTCCAATGGATTTTGGAGCAAATGAAGGAAGTGAGGAatgagaaaggaaagaaaaggttAATGGTGCCCATTTTCTGCCCACACTGACCACTGCCCACCTTCTACTGAGGAAGAATATGGATTTAACCCTTCATCCACTGGTTTCAGCGCAGAATGGAGGAATGAAAACAGGGTCGTGTGACCATTATTTCATCAACGTACATCTTAAATTACACTATTCACACCCATCAcatctgtttttatatttctctttgttacacacacacacacacacacacacgcaaaacatttacttaatattagcTCTGAGCTGAAATACACTAAATGTTTTTGGACCACTTtgcactctaaactctaaaccaaACCTGAAACAAACTGTAGTGTGGACGGCTGTAGCTTGGACTTCTGGACTACTAGACTCTCCCCTGCACCCCACAGCTTCTGCAGTCTTTACCACCACAGAagggtgccaatacttttgttcagaTCTGAGTAATGGCTcttaataagaagaaaaacattgtgATGATGTTCTGCAGGACTCAACCTGCTTGATCTGGCTCTGAGACATACTGATCTTAAAAACAACagggaaaaaatgaaaatatttatatgtgtgtgtgtttaggacaaaaaccttgtatctccaaaaaaaaaaacatttttgaatt

Function

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88125 lncRNA downstream 53681 19610935 ~ 19611878 (-) True G65277
TU88124 lncRNA downstream 55070 19609454 ~ 19610489 (-) True G65276
TU88127 lncRNA downstream 59058 19606290 ~ 19606501 (-) True G65279
TU88121 lncRNA downstream 72446 19592294 ~ 19593113 (-) True G65273
TU88118 lncRNA downstream 77101 19580127 ~ 19588458 (-) True G65271
TU88214 lncRNA upstream 12864 19727307 ~ 19779459 (-) False G65347
TU88207 lncRNA upstream 32442 19746885 ~ 19749668 (-) True G65342
TU88227 lncRNA upstream 53739 19768182 ~ 19769869 (-) True G65354
TU88215 lncRNA upstream 62475 19776918 ~ 19849574 (-) True G65347
TU88238 lncRNA upstream 78340 19792783 ~ 19793144 (-) True G65359
XM_007232715.3 mRNA downstream 59834 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA downstream 59841 19600248 ~ 19605718 (-) False ndufb2
XM_022671463.1 mRNA downstream 150176 19409298 ~ 19515383 (-) True sema3c
XM_022671457.1 mRNA downstream 346142 19305987 ~ 19319417 (-) True cdr2l
XM_022671426.1 mRNA downstream 544099 19111133 ~ 19121460 (-) True LOC103035518
XM_007232707.3 mRNA upstream 18312 19732755 ~ 19738419 (-) True guca1a
XM_015601150.2 mRNA upstream 80711 19795154 ~ 19799583 (-) True llph
XM_022671482.1 mRNA upstream 339508 20053951 ~ 20064790 (-) True acss3
XM_007232807.3 mRNA upstream 468651 20183094 ~ 20189701 (-) True myf5
XM_007232806.3 mRNA upstream 487655 20202098 ~ 20205655 (-) True myf6
TU88123 other downstream 59877 19600214 ~ 19605682 (-) False ndufb2
TU88053 other downstream 381527 19280302 ~ 19284032 (-) True G65231
TU88002 other downstream 641901 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 746037 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 1015216 18643371 ~ 18650343 (-) False LOC111192971
TU88246 other upstream 83236 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 1915515 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 1915678 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 2576242 22290685 ~ 22291682 (-) True G66081
TU89874 other upstream 4793391 24507834 ~ 24508281 (-) True G66619

Expression Profile