RNA id: XM_007238161.3


Basic Information

Item Value
RNA id XM_007238161.3
length 3052
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC103043373
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22305205 ~ 22352523 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCTCTCTTTCATTTCGTCGCACTGGAAAACAGGATCTAAATATTCTGGATCCACTAGCCCCCAGCCTCCTCCCTACCCCCCTTCACAGCCATCACGTGTTTCAGCCAATTCAACCAGCCGCTTGCTGAAACGCTGGAAGCACTTTCTGGAGAAGGTTGTGAAAACCTGCGAGATTGACGTCAAAGATTACACTATTCAAAACACTGCGAACTGACCTGAAACGGAAAGAACTGGATCCGACTCGAACCATGACGAATTAACTCCCGACTCCAAGTGTCTTTCGCCTGCAACCCTATGGGAAGTTTGTGCGACATCCGCGGCGCGCGCAGCGGTGCTGTCCATACGAGCTCATCCTCATCATCCTGAGCTGTTGGGAATACGCTCCATAcatatctttatattatataacggCCCAGAATCGGTAAAGGAAACATCCGACAGAGAGGAACACGCAGCATTTATCGGAGCGAGGATTTGTGgAGTACATCCATCAATGGCAAGAAATTTCATTAGAGAAACCTTAGCCAAGGAAAATGAAACGTTTTTAAGGAGGATGGAAATACCAAACAAGGACAGCTGGTCGCCTGAAAATGGGCCTACGTCAGTGAGACGGCACCCTTTCTGTTCCAGTCTAAAGATGTTCCTTGTAGCCTTGTCCTTTGCCTACTTTTCGAAGGCTTTATCTGGAAGCTATATGAAAagcacaataactcagctggaGAGGCGCTTTGACATCCCCAGTTACTTAATAGGAGTCATTGATGGAAGCTTTGAAATAGGTAACTTGTTGGTTATCGCCTTTGTCAGTTACTTTGGTGCCAAGCTTCACCGACCAAAGATCATTGCCTTGGGCTGTCTGCTGATGTCATTAGGGACATTCTTAATAGCACTCCCTCATTTTATTATTGGAAGATACAAGTTTGAAACATCAGTGAGATCGTCAGCGAACTCAACAAACAACCTCACTTTATGTCCAACCAGTGTGCTTGTGGGTAATCATTCCTCTACACTTTCAAGCACAGGCTGTGAGAATGAGTCCAGGTTATCCATGTGGATCTATGTGTTACTGGGAAACATCCTCCGTGGGATTGGTGAGACCCCAGTACAGCCTTTGGGAATTTCTTATATAGATGATCATGCTCTGGAGGACAATGCAGCGTTCTACATTGGGTGTGTTCAGACGATATCGGTCATAGGTCCAGTGTTTGGTTATCTGCTTGGATCCCTTTGTGCAAAGATATATGTGGACATTGGATTTGTAAACATGGagagcattagcattacaccAGGAGATGCACGCTGGGTAGGAGCGTGGTGGTTGGGATACCTTATAGCAGGGCTCATCACCCTCATATCAGCCGTGCCCTTCTGGTTCTTTCCCAAGTCCCTGCCCGTGCCAGAGGGACGACTGGCCAAGTGCTCTCCTGAGCGGACCAGCTTCATCAAGGACTCTCCTGGACTGGACCACAAGTATCAGGCAGATGAACAATTCAGTTTCGTAAGACTGGCCAAAGagtttTTGCCAACACTGAGATCTCTCCTGGGGAATCCAGTCTACGTTTTATACCTCTGTGTTACTGTCATCCAGTTTAATTCTTTGATAGGAATGGTGAcatacaaaccaaaatacataGAACAACACTATGGACAGTCAGCATCCAAAGCTAACTTCTTAATGGGGGTAATCAACATCCCAGCTGTTGCATTGGGAATGTTCTCAGGGGGTGTGCTTATGAAGAAGCTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCACTAGGAACATCTCTGTTGGGCTACTTTCTGTCTTTGTTCTTCTTTGCCATGGGTTGTGAGAATGCCAAAGTGGCTGGCATCACTGTGTCATATGAAGGAATGGAGAGTCTCTCTCATCAGAACAGCACACTCTTTGTGAAGTGTAATGCACACTGTGAGTGCTCAAAAACAGAATGGGACCCAGTGTGTGGTGAGAATGGGCTCACATATGTCTCACCATGCCTGGCTGGGTGCCGGATGTCTCGTGGCTCTGGAGTAGACACAGTGTTTGAGCAGTGTAACTGCGTGGCAGGAGGAAACCTAACAGCCTACGTGGGTCActgcagacacagagagagctgCCAGAGAGTCTTCCCCTACTTCTTAGCTCTGTGTGTCATCACTTCCTTTATTATCTCCCTGGGTGGAACACCAGGATACATGCTACTCATCCGATGCATCAGGCCACAGCTGAAGTCTTTAGCTTTAGGATTTCACACCCTGACAACACGCACTCTCGCTGGCATCCCAGCTCCGATCTACTTTGGGGCAATCATTGACACTGCCTGTCTAAAATGGGGCCATAAGAAGTGTGGTGGAAAAGGAGCGTGTAGAATCTACAACACAACTGCCTACAGGATAGCATATCTGGGCTTAACACTGGGCCTGAGGACAGCCTCCTTCTTCCTGTGCGCTCTGGGTCTGGTGGTCTTACAGCGGCACATCAAAAGGCAGGAGAACGGCACACTTTCTAACGGCAACACTGGACACACTGTTGCAGAACTGCAAGCACTTAGAAAAGAGGAAACCCATAACTCACACTCAGACCAGTCCCCACGGACCTCAGACTATGACCCTGAGCGGGAGACGCGCCTGTGACACTCACAGATCTAAGCGGTCATGCAGGGAACCATCAGGCTGaatttatgttgtgtttttttgttgttgttttttcctaGAGTATAAAACTATTTCTATCAGATTATATAAAAGATCAGAAATTTGTTGTTTTGACATTGAAAATAACTATtgaatgtaaataatgttttatgaaaaacaaacaaacaaaaaatgtagcAAAATACTTTTGGTGGGTGGAGGGAGGTGATGGATTTTATAagcaagtgtattttttttatttgattgtggTTAATTGCAGGTATCATTACTTTTTAATGCAAAGTGAGACTCTTGTTTTATGTCTGTATTTTCTTAAACACTAAATCTACTATACTGCCATATGAGTGCAGTATTTAGATGGTGGATTAAATACCTGTAACTGAGCCTGCTATTAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89154 lncRNA downstream 6923 22293097 ~ 22298282 (-) True G66080
TU89121 lncRNA downstream 25791 22279097 ~ 22279414 (-) True G66052
TU89076 lncRNA downstream 142805 22161671 ~ 22162400 (-) True G66022
TU89057 lncRNA downstream 173612 22131088 ~ 22131593 (-) True G66004
TU89008 lncRNA downstream 339509 21964958 ~ 21965696 (-) True G65963
TU89188 lncRNA upstream 55027 22407539 ~ 22407750 (-) True G66113
TU89242 lncRNA upstream 587057 22939569 ~ 22949141 (-) True G66159
TU89269 lncRNA upstream 647520 23000032 ~ 23003466 (-) True G66167
TU89382 lncRNA upstream 700761 23053273 ~ 23160179 (-) False dusp16
TU89455 lncRNA upstream 1043234 23395746 ~ 23397609 (-) True G66287
XM_022671527.1 mRNA downstream 32107 22248887 ~ 22273098 (-) True cog5
XM_022671154.1 mRNA downstream 315135 21989255 ~ 21990070 (-) True LOC111192879
XM_007237356.3 mRNA downstream 334563 21965977 ~ 21970642 (-) True LOC103040999
XM_022671524.1 mRNA downstream 427503 21823896 ~ 21877702 (-) False LOC103040407
XM_022671531.1 mRNA upstream 10642 22363154 ~ 22401341 (-) False pde3a
XM_022671530.1 mRNA upstream 10642 22363154 ~ 22401341 (-) True pde3a
XM_007256036.3 mRNA upstream 558675 22911187 ~ 22930186 (-) True ada2
XM_007256035.3 mRNA upstream 577710 22930222 ~ 22937099 (-) True LOC103026244
XM_022671532.1 mRNA upstream 596985 22949497 ~ 22991675 (-) True LOC103031542
TU89155 other downstream 13523 22290685 ~ 22291682 (-) True G66081
TU88823 other downstream 620377 21629958 ~ 21684828 (-) True G65803
TU88824 other downstream 620377 21630121 ~ 21684828 (-) False G65803
TU88246 other downstream 2505603 19797679 ~ 19799602 (-) False llph
TU88123 other downstream 2699523 19600214 ~ 19605682 (-) False ndufb2
TU89874 other upstream 2155322 24507834 ~ 24508281 (-) True G66619
TU89906 other upstream 2307512 24660024 ~ 24661902 (-) True G66642
TU90658 other upstream 5768750 28121262 ~ 28132779 (-) False LOC103041081
TU90659 other upstream 5768750 28121262 ~ 28132779 (-) True LOC103041081
TU90660 other upstream 5768750 28121262 ~ 28132779 (-) False LOC103041081

Expression Profile