RNA id: XM_007242359.3


Basic Information

Item Value
RNA id XM_007242359.3
length 1129
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC103035404
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18717502 ~ 18718630 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCCTGCAGATGATCCACAGCTCCACACGAGAACCCAACCCCTTACTATTCCTCATCTGCATGCTCCTCTTCGATTGGTCACTGTGAGGGATGCTGCTGTGCCGTGATTGGCTGGCAGCTCAGAGGGGGCGTGCATCCTCAGCGATTGAGAAATCCTATAAATAGAGCGTACAGGCTCACCAGCCTCAGAAGCACCTGTCTGCTGTGTTCAGAGCGCATCATTCCAGCTCCAGCTTCTCAATGGATCTCCGCAAGATCTGAGACAACCAGCACTCGTCTTATCTCATCTTATCTcgtcttatcttgtcttatcttgtctcTTATCTTCAGATCTGTCTTCAGAAAGACTTCAAAGACTGAAAGACGTTAAGAATTCCAGACGACAGGTTGccaaatcctcaagatttaacTAAAGGCGCAAGACTTTCTCAGCATCTTCTGAACAACAAGAGACGTCATCCGGTAGAAACAGTAGGAACcgtaggaacattaggaacatgtCGCTGGACGTCAAAGAAGAGAAGACAGAGATACGCCTGGTCTTCATGGGAGCGGCCGGCGTCGGGAAGACAGCCCTGATCCAGCGCTTCCTCCAGGACAGCTTCGAACCCAAGCACCGCCGCACCGTCGAGGAGCTCCACAGCAAAGAGTACGAGGTTGGCGGCGTCAAGGTGACCATCAACATCATGGACACCAGCGGCAGCTACTCCTTCCCCGCCATGCGCAAACTGTCCATCCAGAATGGGGACGCCTTCGCCCTGGTCTACTCCGTGGACGACCCCGAGTCGCTGGACGCCGTCAAGAGCCTGCGAGAGGAGATCCTGGAGGTCAAGGAGGACAAGTTCACCCCCATCGTGGTGGTGGGCAACAAGACGGACCGGCTGGGCGAGCGGCGGGTGTCGGCCGACGACGTCCTCGCCACTGTGGAGCTGGACTGGAACAACTGCTTCCTGGAAGCTTCCGCCAAAGAGAACAACAACGTCCTGGAAGTGTTTAGAGAACTTCTTCAGCAAGCCAACCTGCCCAGCCGCCTGAGTCCTGCCCTTTGCCGCCGCAGAGAGACGTTCCCCAAGAACGTGGGGACGAGACCGCCCATGAACAAGACCAACAGCTGCACCGTGTCCTGAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87810 lncRNA downstream 4982 18624875 ~ 18712520 (-) True LOC111192976
TU87811 lncRNA downstream 8066 18705140 ~ 18709436 (-) False G65064
TU87812 lncRNA downstream 8066 18705140 ~ 18709436 (-) False G65064
TU87815 lncRNA downstream 8066 18705140 ~ 18709436 (-) False G65064
TU87816 lncRNA downstream 8066 18705140 ~ 18709436 (-) False G65064
TU87880 lncRNA upstream 41170 18759800 ~ 18760297 (-) True G65102
TU87885 lncRNA upstream 41741 18760371 ~ 18816516 (-) True G65103
TU87890 lncRNA upstream 63241 18781871 ~ 18836432 (-) True G65108
TU87893 lncRNA upstream 115217 18833847 ~ 18835436 (-) True G65111
TU88004 lncRNA upstream 182997 18901627 ~ 18908694 (-) True G65185
XM_022671437.1 mRNA downstream 67201 18638307 ~ 18650301 (-) False LOC111192971
XM_022671436.1 mRNA downstream 67203 18638307 ~ 18650299 (-) False LOC111192971
XM_022671435.1 mRNA downstream 67204 18638307 ~ 18650298 (-) True LOC111192971
XM_022671447.1 mRNA downstream 87533 18625075 ~ 18629969 (-) False LOC111192976
XM_022671445.1 mRNA downstream 87533 18625075 ~ 18629969 (-) False LOC111192976
XM_022671426.1 mRNA upstream 392503 19111133 ~ 19121460 (-) True LOC103035518
XM_022671457.1 mRNA upstream 587357 19305987 ~ 19319417 (-) True cdr2l
XM_022671463.1 mRNA upstream 690668 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 881618 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 881618 19600248 ~ 19605718 (-) False ndufb2
TU87843 other downstream 67159 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 786332 17928507 ~ 17931170 (-) True G64886
TU87274 other downstream 1119957 17586845 ~ 17597545 (-) False LOC111192911
TU88001 other upstream 179555 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 179555 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 561672 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 881584 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 1079049 19797679 ~ 19799602 (-) False llph

Expression Profile