RNA id: XM_022671463.1


Basic Information

Item Value
RNA id XM_022671463.1
length 2637
RNA type mRNA
GC content 0.54
exon number 18
gene id sema3c
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19409298 ~ 19515383 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctctctctcttctctctctctctctctctctctctctctctctcactttctcggTGTGGATTTACCAGCAGCTGGGTGTCAGTAGGGCTGAATGAGGAGGACTGTAGGGGTATTGGACAGCACTGAAAGTGGACGGGACTGAAGGTGTGCTGGTGTAGTTTTGTATCCTCACTGTTGGAGTGATGGAGGGGTTGGTGAGGTCTGTGATGTTGAGGCTGGTGATCcttcctctcctcttcttcACCACCTTCATCTCCGCTATCTCTCCACCACAGCCCAGAGTCTTCCTCCCCTTTCAGGagcTGCAGACGACGCAGGCGTTCGAGTTCTACACTCTGTCGGAGAAGGCGATGGACTACAGGATCCTTTTTATGGATGAGGATCAGGACCGGATGTACGTGGGCTGTAAAGATCATGTTCTCTCCATGGATATCAATAACATCACGCAGGGAACCCTGAAGATTTTCTGGCCGGCATCCAACACTAAGATTGAGGAGTGTCAGATGGCGGGTAAAGATCCCACAcacgGCTGTGGAAACTTCCTGCGGGTGATTCAGCCCTATAACAGAACTCATCTGTTCATCTGTGGCAGCGGCGCCTACAGTCCAGTGTGTGCGTACATTAACCGCGGCCGGAGACCCGAGgAGAAAGTGTTTAATATAGCCTCTCGGGGAGAGTCGGGGAAAGGTCGCTGCTCATTTAGTCCACGGGTCAACACCGTCTCCGTCATGCTcaATCAGGAGCTGTTCTCTGGAATGTACATCGACTTTATGGGGACGGACGCGGCTATCTTTAGGAGTCTGACCAGCAGGAACGCAGTGAGGACCGACCAGCACAACTCCAAATGGCTGAGCGAACCCGTTTTTATTGATGCCCACTTAATCCCTGATGGATCGGATCCGAACGATGCCAAGCTCTACTTCTTCTTCCGAGAGAGACTGACGGATAACAGTGGCAACACCAAGAACATCCACACCATGGTGGCACGAGTGTGTCCGAATGATACAGGTGGTCAGCGCAGTCTGGTGAATAAATGGACCACGTTTCTGAAAGCCCGGATGGTGTGTTCTGTTCTGGAAGAAGACGGCACTGAAACACACTTTGATGAGCTTGaaagtgtgtttttgctgGAGACGGACAATCCTAAGGGTCTCCTGCTGTTTGGAATCTTCACCTCCACCAGCTCTGTGTTTAAGGGTtcggcagtgtgtgtgtacaacaTGGCCGACATCCTGACGGTGTTTAATGGGCCGTTTGCTCATAGAGAGGGTCCAAATTTCCAGTGGGTGGCATTTCAGGGGCGCATCCCGTACCCTCGCCCTGGAACGtgtcCGGGCGGGGCGTTCACTCCTCATATCCGCAGCACTAAGGAGTTTCCGGATGATGTGGTGACGTTTATGCGGAATCACCCGCTGATGTTTAACCCGATTTACCCGGTGGGCCGCAGACCACTGCTGGTCAGAACTCACGCTGAGTATAAATACACCTCCATCGTGGTGGATCAGGTGGCCGCGGCTGACGGGCTCTACCGGGTGCTCTTCCTCGGCACAGATAAAGGCACAGTGCAGAAGGTGGTGGTTCTGCCCACTAACCGTTCACTGGGAGATGACCTGATACTGGAGGAACTGGAGGTGTTTAAGAACCAGGCCCCCATCACCAACCTCAGGATCTCCTCCAAGAAGCAACAGCTATACGTCAGCTCGGAGTACGGCGTATCCCAGGTGTCTTTGCATCGCTGCAATGCGTACGGCACAGCGTGTGCCGACTGCTGCCTGGCACGGGATCCGTACTGCGCCTGGGACGGACTGAGCTGTTCCCGATTCTACCCCACCGGAAAGAGGAGAAGCAGAAGACAGGACATCATGCACGGAAATCCACTCACACAGTGCCGGGGCTTCAATCTTAAAGCCTACAGGAATGCAGTGGAGATGTCGCAGTACGGGATCAGGAATAACACCACGTTTCTGGAGTGTATTCCCAAATCACCCCAGGCCTCGGTCCGCTGGCTCATCCAGAGAGACAACGACCGCAGGAAAGAggtGAAGCTGAGTGACCGAGTGGTGGCGACTGACCACGGTCTGCTGATCCGTTCGGTGCAGTCGTCTGATCAGGGTCTGTATTACTGTCTGGCCACGGAGAACGGCTTCAAGCGCACTTTAGCTAAAATCCGTCTGCGCGTGCTGGGCGAGGCGGTGGTCAGCGCTCTCAGCGATAAGCAGCGGTCATCCTGGGGGTGGGGCCTGAGCCCCAAGGCCCTGGCGTCGGCCTTCAGCCCGGCGGAGACGCTGGCCATGCAGCAGTACTGCAAAGAGCGCAAGCAGCTCCAGACCTTCCAGGGTCCACTGAGGGGCGACCTGGCCAAACTCAAACCCCTGCTGGATCACAACAAGAGCCGGAACCGCCGGAACCACTGACCCCAGGATAAGAGGAATGGACTGGAGGAGACGAGGAGATTTTTTTGGACAGAGCTAGAGATGTGGACTGAGGAGAGGAACTGAGGATGGGGAAAAAGGAgaggaaagaaaaggagaggagaagaaaaggaagGAGCGCTGTGGATGGAGGAAAAGTAGGCAGGGCTTTAAAAGCATAGTTTGGCCTAAACAAAATCAAATGTACACCGTTC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88094 lncRNA downstream 24879 19378714 ~ 19384419 (-) True G65251
TU88058 lncRNA downstream 38590 19305987 ~ 19370708 (-) False cdr2l
TU88055 lncRNA downstream 103887 19302894 ~ 19305411 (-) True G65232
TU88060 lncRNA downstream 159136 19249186 ~ 19250162 (-) True G65236
TU88044 lncRNA downstream 160611 19139597 ~ 19248687 (-) True G65222
TU88118 lncRNA upstream 64744 19580127 ~ 19588458 (-) True G65271
TU88121 lncRNA upstream 76911 19592294 ~ 19593113 (-) True G65273
TU88127 lncRNA upstream 90907 19606290 ~ 19606501 (-) True G65279
TU88124 lncRNA upstream 94071 19609454 ~ 19610489 (-) True G65276
TU88125 lncRNA upstream 95552 19610935 ~ 19611878 (-) True G65277
XM_022671457.1 mRNA downstream 89881 19305987 ~ 19319417 (-) True cdr2l
XM_022671426.1 mRNA downstream 287838 19111133 ~ 19121460 (-) True LOC103035518
XM_007242359.3 mRNA downstream 690668 18717502 ~ 18718630 (-) True LOC103035404
XM_022671437.1 mRNA downstream 758997 18638307 ~ 18650301 (-) False LOC111192971
XM_007232715.3 mRNA upstream 84865 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 84865 19600248 ~ 19605718 (-) False ndufb2
XM_007232709.3 mRNA upstream 150176 19665559 ~ 19714443 (-) True lhfpl3
XM_007232707.3 mRNA upstream 217372 19732755 ~ 19738419 (-) True guca1a
XM_015601150.2 mRNA upstream 279771 19795154 ~ 19799583 (-) True llph
TU88053 other downstream 125266 19280302 ~ 19284032 (-) True G65231
TU88002 other downstream 385640 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 489776 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 758955 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 1478128 17928507 ~ 17931170 (-) True G64886
TU88123 other upstream 84831 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 282296 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 2114575 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 2114738 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 2775302 22290685 ~ 22291682 (-) True G66081

Expression Profile