RNA id: XM_022671527.1


Basic Information

Item Value
RNA id XM_022671527.1
length 4961
RNA type mRNA
GC content 0.44
exon number 22
gene id cog5
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22248887 ~ 22273098 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTCGCGCTGGGTAGTGTCGCAGAGTGTTCACGTCATGAGTGAGGTGGCAGTAATGGAGGCTGGAGGAGAAGAGGCGGCCGCGGTCTCTGTGATTAAAGAGCTGAAGGACGAGAGTTATGGAGAATTTCTGAAGCAGGAGTTCGATGTGAAAACATACACAGCGCGCGCCATTCATCATGCAGTCATCGCAGAGCAGCTCGCCAAGCTCGCGCAGGGCATCAGTCAGCTGGACCGAGAGCTGCACTGCCAGGTGGTGGCCAGGCATGAAGATCTGCTGGCGCACGCCACAGGGATCGAGTCTCTGGAAGGTGTGCTGGAAATGATGGAGACAAGGATTGCGGCACTGCAAAGTGCTGTAGACAGGATACGGACCAAAATAGTTGACCCCTATAATAAGATTGTGGTTCGGACTTCTCAGCTTGCACGACTACAGGTAGCGTGTGATCTGCTCAGGAGAATAATCCGTATCCTGTATCTGAGTAAGCGCCTGCAAGTTCAACTTCAGGGTGGCAGCAGGGAGCTGACCAAAGCTGCCCAGAGCCTCAATGAACTGGaCTATTTGTCTCAGGGAGTTGATCTGTCTGGGATTGATGTCATTGAGAATGACCTGCTGTTAATCAGTCGTGTGCGCCTGGAGGTGGAGAACCAGGCTAAAAGAATACTGGAGCAGGGAATGGAGATTCAGAACCCCTCTCAGGTGGGAACAGCACTGCAGGTCTTCTACAATCTTGGCAGTTTGAGAGAGACCATCATCAGTGTGGTGGATGGCTACAAGGCTTCTGTCCAGGAGAGCATAACCAGTGCCCTTGATGTTAAAGTCCTTACTCAACCTGCAAACACCAGAGGGGCTCCAGGTAGGGCTGTTATACCGATTCCAGGAAACACAGCTACTTTTCGTGCTGCTCTTTGGACCAACCTAGAGAAGCTAATGGACCACATTTGTTCTGCTTGTAGTCAgGTGCAGCACCTTCAGAAGGTCCTTACCAAAAAAAGGGATCCTGTCACTCACGTGTGCTTCATTGATGAGATTGtcaagGAAGGTCATCCAGATATCTTATACATTTTCTGGAATTCTGTTACTCAGATGCTCTCTGTGGAACTCAAAAAAAGCACACAAGcCTCCACGTTCCTGAAGCAGGCTCTGGAAGGAGAGTACCCTAAGCTCCTGAGACTCTATAATGAGTTGTGGAAACGGCTACAGCAGTATAGTGCCAAGATACAGGTGGTGCCGGTAGGCAGTGGCTCAGGGCTGGAGTTTGATTCAACAGTGACTGAAAACGACATTCAAGACCTCTTCACAAATACTAAACAGGAGTATGATCCAGAGAAATCCCTGAAGGAGTCTCTGCAGCCATATGAAGCAGCCTACCTCTCCAAATCACTCTCACGTCTGTTTGATCCAATCAACTTGGTTTTCCCACAAGGAGGGTATAGCCCTCCAGCCAGCGATGAGATGGACAGTATCATCAAAACCATCGCTAGTGAGCTGAATGTTGCGTTAGTAGACCCTGGATTGACTGTTGCTGTGGCAAAGAATGTCGCCAAGACAGTGCAGCTCTTCTGTGTGAAGTCTGAGCAGCTGCTCTGTACACAGGGGGATGCCAGTCAGGTGATTGGACCATTAACCGAGGGTCAGAGGAGAAATGTAGCAGTGGTGAATTCACTGTACCAACTACAGCAAGCTGTGTCTAAAGTCATTTCTGCGCTGAGTATCCCTGTGGATGCAGAGCAATCACTTACAGCCTCTTTGGAGTCAGTGCAGGCTCTGATGGACAGTGCAGTCCAGCCGTTGTTGATGTCCGTCACAGACTCTGTGGAGGCCATTCTAATTACTATGCATCAGGAGGACTTCTCTGGccCCATCCCTGCAGGAGATAAGCCAGACATGCCTTGCTCTCTGTACATGCGAGAGCTGCAAGGCTTTGTGACCCGGGTGATGAATGACTACTTCCGTCCACTGCAGTGCCTGGATTTTCTTTACGATAGAACAGAGGGTGTTGCCCAGCGTGCCATTACTCTATTCATCCGCCATGCATGCCTACTGCGGCCACTCGGCGAGGGTGGCAAAATGAGATTGGCTGCAGACTTTGCCCAGATGGAACTGGCTATTGCACCTTTCTGCAGACGAGTGTCAGACTTAGGGAAAGTGTACCGCTTGCTGCGTTCATtcagGCCTCTTCTGTTTCAGACGAGTGAGCACATATCTAGCTCTCAGGCTGTGGGTGATCTGATTCCGTACAGCACAATCCTGCACTTCCTCTTCACTCGAGCCCCAGCTGAACTGAAATCTCCTCATCAGAGAGCCGAGTGGTCTGTAGCACGGTACTCTCAGTGGCTTGATGATCACCCCTCAGAAAAGGACCGACTTGTTCTAATCAGAGGGGCTCTGGAGGCTTATGTGCAGTCTGTACGGGCCAGGCAAGGGAAGAATTTCGCACCTGTGTATCCTGTCATGCTCCATCTTCTACAGAAGGCCACCAGTGGGACATAAGATGATTTTAAAGAATCAAGAATTAACAGAATAACTTAAATCACTTTTAAAATCATTACTAAAAGGTGCAAGCAATATATGttccttctaattcagattATACATTTCCTTTAATTCTTTTAGTCTCCCCAGCATTACATGCTTTAATTGACCATATTGTATATGTACACATCCTTTCTAAGTTCCTATTTCATGTTTGGTGCAACGCAGCTGGAAGATATTGAAaagtaaatgataaataaattaacttactGAGCAAAGCTTGAGcgattttattttacacaaacatagcTTCATCTATACTGTAGTATAGCTGCACCTAACATTGGCAGTATACAGAAACTGGACTAATTCCTGTTCTCAGTTGGGAGCAGTGGGAATGTGAAGTACTACGTTTGTGAACCCCCTAGGAACCACCACAAACACTGTAGCAACCGTAGCCTTTATTCAACAATACCTGGCAACACCATAATAAGCATCAAGTAACTGGATTGTAACCACGTGGGGATACCACTGCAGCCACCTACCACATACATGCagcatattaataataataacacaagaTGTTGTCATCTTTGTgaacattttgtacatttgttaAGTCACTGGAATCAGGACTATCAAAGCACACTTTATTAGGTCCTGTAGTCAAACCCGCCAAAAACCTGTAATAAAACGTATATACTGTCCGGGTTAATTCCCAAAATTGAAAGTTTTGAAGTAAACTGGAATCACTGACTAATAACTGGGCCTTTCACTAATTTGTTTAAGTGAGCATCAGTAAAAGGTAACTATAATTTTGCTactagaaattagaaataaatgacaTTGTTACATAAATTGCTGTGGAAACTCTATGCCGTGAAAGctagtgatgttttttttttctatgtttttagagtttgtcattttcattttctattttatgcagttttttcctttttccaagttttttaaaatgctttttaataagACAGCAACAATCAACCATGCTGAATTACAGCACACTTTTAAAAACTATGTATTATGCAGgatgcttaaaaaatatatgtaaaaaaaaaaaaaaaaaaaaaaaaatcctataacTGGCTGGGCTGAGCCCCGGATCTTTAGATAACCAGGCAACGTCCCTGGTGGCTTCCTCTGCCACTGCTCCTTTGTCAGCAACAAAATGTGCAACACCCTCTGGCCTGGCAATGGCCACTAAAGGACTAACCTACTAAAGGACTGAAGACAGGACTAGGAACTTACCCAGAGCCTTCACTTCTGTGCCAGTGCTACCCACTAATTATGCACCTCCCACCTCCGCTCCTTTCCCATGTCCACAGCACTTGTGGCAGTGGTGCACCGTCTTTTCCCTGTGCCAGCTGCACCTGCCAGTCCTAGCACCAGTGCCAGTTGCACCTGCTGCTTGTCACCCCAGCTTACATGTCAACTCCCAATTTGTCTGATCCAGTATCGACATTCAGAACTTCGCCCAGACTCGTCTCACAGACTCAGAGTGTACCTCAGACTGTGTCACCAGGTTCATACCTGTTCCTGTTCAGAGAAGGCCCAATGATTTCtgcaaataagaaaatacatgtttgttttaaatttaaaagattACACCAATCAGTTTACACTGGTTTATTGTTACTTTTTGGTtggaaacaaaacaaatcaaccCCAATTATCTCATAACTCTAAACAAACAGCTCGGTAACTGCTTAACTGGAAGCTAAAATAATAGTCACCTAACATCCATGAGCTAGTCACAGTGTTGAACTTTATCACATGCAGGTGAAAGGGTCAGCTACAGAATCAAAAGTTCTGTTTATTGGAGTGAAAATGTGTGCACATGTTTCCACCAGATATAGTACATTAATGTACACATGATGCTTGGTTACTTAATTCGTATTATCAGCACTTggttaaattataattatttttgtggAGTTTTATAAACGATTGCTACTCCTATATAAatcagtgttgtttttaaaatagtttacagTGCTAAAGAAAAACAGGATTACTAGATTGTCTTTTCTCccactcttttctcttttcttgtaaaatatatagtataaatgtAAAACAAGAAGAACCttgagaaacagaaacatttttaaTGACAAATGAACaagttttgcattttttggATCTGTATCATCCATGTGGAAAAAGTTATTAATAGCCACTGTAACCAGATGTTTACAGTAACTGAGTAGCAGTCTTTTATGTTGCTGTAGGGTGATTTTAACCTGCTCATTCCGAGTCACTTTGGAGGGATGTGTAGCATGAACTGCCACAGTATCCTGACGGCCCAAGTTTGCCTCTTTAAAAGCtaattttgtttctttgtgttgATTTGCTCTTGCACTTCAGATTGATTAACATTGTTACACTAGTCTAGTGCTCCAACCTAGTCCAATTCCACAGAGCGGATTAAATTGATGTATgattaaaactaactgaactATTAA

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20292 COG5; conserved oligomeric Golgi complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89076 lncRNA downstream 86487 22161671 ~ 22162400 (-) True G66022
TU89057 lncRNA downstream 117294 22131088 ~ 22131593 (-) True G66004
TU89008 lncRNA downstream 283191 21964958 ~ 21965696 (-) True G65963
TU88995 lncRNA downstream 287781 21959297 ~ 21961106 (-) True G65950
TU88994 lncRNA downstream 289969 21957494 ~ 21958918 (-) True G65949
TU89121 lncRNA upstream 5999 22279097 ~ 22279414 (-) True G66052
TU89154 lncRNA upstream 19999 22293097 ~ 22298282 (-) True G66080
TU89147 lncRNA upstream 26383 22299481 ~ 22361569 (-) True G66074
TU89158 lncRNA upstream 38369 22311467 ~ 22313798 (-) True G66084
TU89159 lncRNA upstream 47083 22320181 ~ 22321222 (-) True G66085
XM_022671154.1 mRNA downstream 258817 21989255 ~ 21990070 (-) True LOC111192879
XM_007237356.3 mRNA downstream 278245 21965977 ~ 21970642 (-) True LOC103040999
XM_022671524.1 mRNA downstream 371185 21823896 ~ 21877702 (-) False LOC103040407
XM_022671523.1 mRNA downstream 371185 21823896 ~ 21877702 (-) False LOC103040407
XM_022671522.1 mRNA downstream 371185 21823896 ~ 21877702 (-) True LOC103040407
XM_007238161.3 mRNA upstream 32107 22305205 ~ 22352512 (-) True LOC103043373
XM_022671529.1 mRNA upstream 42385 22315483 ~ 22352523 (-) False LOC103043373
XM_022671531.1 mRNA upstream 90056 22363154 ~ 22401341 (-) False pde3a
XM_022671530.1 mRNA upstream 90056 22363154 ~ 22401341 (-) True pde3a
XM_007256036.3 mRNA upstream 638089 22911187 ~ 22930186 (-) True ada2
TU88823 other downstream 564059 21629958 ~ 21684828 (-) True G65803
TU88824 other downstream 564059 21630121 ~ 21684828 (-) False G65803
TU88246 other downstream 2449285 19797679 ~ 19799602 (-) False llph
TU88123 other downstream 2643205 19600214 ~ 19605682 (-) False ndufb2
TU88053 other downstream 2964855 19280302 ~ 19284032 (-) True G65231
TU89155 other upstream 17587 22290685 ~ 22291682 (-) True G66081
TU89874 other upstream 2234736 24507834 ~ 24508281 (-) True G66619
TU89906 other upstream 2386926 24660024 ~ 24661902 (-) True G66642
TU90658 other upstream 5848164 28121262 ~ 28132779 (-) False LOC103041081
TU90659 other upstream 5848164 28121262 ~ 28132779 (-) True LOC103041081

Expression Profile