RNA id: TCONS_00000093


Basic Information

Item Value
RNA id TCONS_00000093
length 5065
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_000046
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2101541 ~ 2217861 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAACCGTCTGGCTCAAGAACGTTTGGAGACCTGGAGCATGTTCTTATTGTCGCGCCAGTGTTGTGCACCTGGGACTAAATGACTGATGAACAACTTGGCAGAGATTGACAGCTTCACTGATAGCGGGCATCTCCAATGCGACAGCCACGGGGGCTCTGAATGTGACATCTCTATTTAAAGGGCCTCGCCAAACAAACTGAGACCAACCTCAAaagtacagcaacacacaaacgCGCAGACTATTTCAACCCAAATCAACAGACAACATTCACAACACAACTATGGCTTTAAACATCGCATCGATACgagacacaaaatggctgactcTGGAGGTGTGCCGGCAGTTTCAGAGAGGGACGTGTTCGCGCAGCGACGAGGAATGCAAATTCGCACATCCGCCCAAAAGCTGCCAGGTGGAGAACGGACGGGTGATCGCCTGCTTCGACTCGCTGAAGGGTCGGTGTACGAGAGAAAACTGCAAGTACCTTCATCCACCGGCACATCTGAAGACGCAGCTGGAAATCAACGGACGCAACAACCTCATCCAGCAGAAGACGGCGGCAGCCATGCTGGCACAGCAGATGCAGTTCATGATCCCTGGCACCACCATGCAACCAGTGCCTACATTTCCTGTGAGTCAAGGTCTGGGCTCGAACCCAGGTCTGAGTTACGCGCCGTATCTGACTCCCATGAGCCACGGCATGGGTCTGGTCCCCACAGAGATGCTCCCCAGCACCCCAGTCATCGTCCCGGGCAGTCCTCCAGTCAGCGTGCCCAGCTCGTCCTCCACGCAGAAACTACTGCGCACAGACAAGCTGGAGGTGTGCCGTGAGTTTCAGCGGGGTAACTGCGCGCGCGGCGAGACCGACTGCCGCTTCGCCCATCCTAGCGACAGCCCGATGATCGACACGAGCGACAACACGGTCACGGTGTGCATGGACTACATCAAGAGCCGCTGCTCACGCGAGAAGTGCAAGTATTTCCACCCTCCAGCGCACCTGCAGGCCAAGATCAAAGCAGCGCAGCATCAGGCCAACCAGACCGCCGTCGCAGCGCAGGCCGCCGCTGCAGCCATGACTCAGTCGACTGCCAAAGCAATGAAGCGACCCCTCGAGGCATCTGTAGATCTGGCGTTTCCGCATGGAGTCCTGCAGCCCCTACCAAAGAGACCAGCACTAGAAAAGAGTAACGGGGCCAGCACGCTCTTCAACCCCAGTGTCTTGCACTACCAACAGGCTTTGGCCAGCGCACAGCTTCAGCAGCCCACCGCTGCGTTCTTTCCCACAGTACCCATGATGTACAGTGCTACGCCTGCTACTGTCTCTGCAGCAACAACTCCTGCCACAAGTGTCCCCTACGCAACAACAGCACCAGCCAATCAGaTCATCTTGAAGTAAATCACCGAAGAGGAACGGGGTGTCAGGAAGCTGCTCTGAGAAACCCAAAAAGATCCCCGTGTAAATACGACCTGCCCTCCCCTTTAGAACTACAGCAACCTGCATGCTAAAGCGAAATACAATAGCAAGccactacaacacacacactcacacacacatctgttatgCTCAGAAAAGTGATTTAACTGGTTActtaaaagatgtaaaaaaaaaagagacaagaaatatatatatatatatatatatacatacatatgtatatatatgtatagatgaACATGTTAATGTACAGCACGTTTCATAGAGGTATAAGTGAGCTTCATCTGAATGATCGGTCACCTGTCAGATAATGTGTATTTTTCTCCCATGTTTGAAATGAAATGCACAATGAGTGGgcgacaaaacacacacacatatatatatatatatatatatatatatatatatatacacacacacacacacacacttggtttGCACTGTCAGAAATAGTGCTTAATATTAAGTGCTTGATTGTCTTGAACGGGAGGACGTCTCCTGAAGAGTTTGTCTTAAACATCCCCATGCACCCTCCGGATAGGGGAAAGAGGGATCgcttgagttttctttttttaatttctcttCAATACTCAAAACCAACACCGAATGTCACATGGCGGACAAACAGAAGATTGTCTACTGgtcaaaaaaattgttaaaaacttCCTCGAGTTCCTCCTCCTTGGACTTGAGCCGAAGCGGGAACGATTGGATTCGCTGTTCTTCATCGGCCAAAGAAAGGTTTACAACCGACACCAAGCTCAAAACAGTCAGTGTCAGAAGTGCGAATGTGGCAAACCACGTGCCATGCAAACACGTTTTTGTCTGCGTCTCTCTGCTAAAGGActgcttttcttttgtttttaaatggacgGTGAATGAATTCGATGTGTCTGTGGAAACACTGGCCATCAGGGAGTCGACTCTGGCTTCTATCCCGTGCCAAGGGCTTACATTAAACTGGAGagctgctgtaaaaaaaaaaagactcatacTCTGAAACGGACTTCTCCAATTTGTACAGGACCTCGTGGTCCTGATCACATGGTGCCCAGTGAGTGGATAATGCGACGATTGGAAGGAGGAGGCGCGAAACGTTGCAGTAGACGATCTTTGACATGTTCTGAATGGAGGGCGCTACGCTCTCGCCGATAATCCTGTTTTATTTGATAAACAGTAGAAGtgcctaaaatatatattttacacagcgagCATCTTGAGAAGATGACTTTATGTAGGGTTGGGGGttgtaaaacacaaaaacaaagctCCCGAAAGGATCTCGGCTAgaaaagagacacacacacacacaaaagagcaTTTCATGCACATCACTGTCTGTTTCATTACACAACATCGATGTTGCTAGAAATCGGAAAGGCAGAATGTTAGTCGTGGACAGTGGAAATGTAAGGAAACTTCGTCAGGGTGAGCTCAATGTCTGTAACGTGTGACGTTTTGAATTTGGACTGTCATAGCGGTGTGTTCCTAAGCAGTTTTGTTGTTGAATCGTTAACAACTCATCTGTCGTTTTCTTACTATATAACATCTAACagtttagtttgtattattattattatttacacgtTGTTTTAACCTGGAATAAGTGCACACGGCCTTCTCATCCTCCCTGATTTCTGATGggcgtgtgtttgtgcgtgcatgaATGCATGGAGTGTGTTCGCGATCCAATCAGAACCATCATGTGTTTTCATGGTGCTCGATAAACACAGACAATCCACTAAGAGACGTTTGGTTTGGCTTGGCAGGAAAAAAACGGCACTGGTCTTAGCATTTTCTCTTTAAATTCACCTTGTGTTGGGGCAAAAGTTacagttttaatgtaatttttgaaGTGGAacgtgatttaaatatttttatcgtCATATTCTGTTCATCCTATTTTTCGTTTTGTTGAATACTAGAACACAGAACAATGGTGTaacctattttaaaaatgaatgtaatttaTTAAGCCGGGCTTAGCTATGCGCGTTTGTCCACGAAGACGGCGGCTTCGGCCAAAATCAGGAGATCTCTCATTCGGGACGTCGCGTTGTAGCGCAAGCGAGGCTATAGAACTGCTTGTGTTATGTACAAATGTTTATTGTATAGGTAatgttttaccaaaaaaaaaaagcataaaaacaaaacacaaaaaaaaaataaacacataaaaaaataaacacaattttccGTAGTATGATAGTTCTttcttaataatattaagttgTTGCTGTGGCAACCTAAAGTTGCGGATACTAAATTTTGGTATTTTTGTAAATGACGTAATTGTTAAGTTGATTCTTTCGTTCGttctttgatttgatttgatttgtttttttcctaGAGCACTGTAAAACGTTAGATTGTAAAGCAGATATTGGAACATTTCCTATTTTATGTCAAGATTATATTACCAAGAGATTTTTCGGTAGCATTTAATGGCCTCCTTATCGGTGTAACATTTAAGATAGTAGTAAATACTCACCAGTTACAATAGCGTGACGTAACTTAAGAAACTACTAGTGTTCGGTGCCCCCTTTTAGATTGACAAAGGATctcaagtacttttttttatatctatatatataactatatatatatatatatatattatttatgaaaGTTGTCCTGGTTTGTTCAACAAATAAACGAGTTGCACTTTGATTTCATGTAACTGTAGGATGTTCATTTCAAACCGATGCACAATGAATATGGTATGGCAACAACACAAATCAATGACGGTTGTTTCTAATTGCTTTCGTTTAACCAGAACTCAATATTCAGTACGCATCTTGCATGGTATTTTATGTCAAATTTAAGAACTTATTTTCAATTTAACCTGagaaaagttacaaaaaaaaaatttaaatatattgaatGTTTCTGTCTACACTataggaaataattaaaaaaagatatctGCACATGTGATTAAAGTAACGATTGTCCTGGATTTGGGATTTCTAACACCCTATgagaatagagagagagagagactaaatAAACTCTAGTTGACTGATGGTGAAAAAGCACTTTGGAATCAGTTGATAAACTGAGCAGACACAGCGTATCCAAACACTTTGCCTTACCTTTAGTCCATCGTTTATAAGCTTTTGTGTTTCAGAGCTATTAATATGTACTAGGGTGTCAACAGGTCTCAcctccatttatatatatatatgactattcTATACCTATAACTATAAGACATGTAAGAGTTTTtgtatgatgattattattattattttaaagcattgtCACTGAGAGGCCCGGTGGTGTTGATGCTTTTTCAATGCTCTTTCCTGATTGTGACGAAACGCCACGGCGTTCGCTGGGGGATTGTGGGATTTTACGCTGTTCTGCTTGACTTCCATCAGTAATGCAGTAgcccatccatacacacacacacatacacacacattcacaagaGATATACCAGAAGAAAAATGATAAACCAAGCCCTCTTTGGATGATATTAGTTTTCATGTaaccattttaaatgttttatttgtgcatatatattatgTGCTATTTTATGTCATATAGTCAAATGTTTTTGGTTccagaaaaatagtgtaaaatctATTGAGacaaaatgaataaagaaagaaaaaacaggaC

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0001654 eye development biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9582 Predicted to enable RNA binding activity. Acts upstream of or within animal organ development; chordate embryonic development; and muscle cell development. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in several structures, including chordo neural hinge; gonad; nervous system; pectoral fin bud; and solid lens vesicle. Used to study myotonic disease. Orthologous to human MBNL2 (muscleblind like splicing regulator 2).

Ensembl:

ensembl_id ENSDART00000124534

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002808 lncRNA upstream 105530 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00003015 lncRNA upstream 123543 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00000077 lncRNA upstream 229332 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 336652 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 397691 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000101 lncRNA downstream 78730 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1500805 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2380199 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 2683599 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00003018 lncRNA downstream 3093618 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00000081 mRNA upstream 102075 2025085 ~ 2027100 (+) True XLOC_000045
TCONS_00000080 mRNA upstream 128818 1941031 ~ 2000357 (+) True XLOC_000042
TCONS_00000079 mRNA upstream 205922 1915967 ~ 1923253 (+) True XLOC_000041
TCONS_00000078 mRNA upstream 217794 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000076 mRNA upstream 229327 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000096 mRNA downstream 4502 2222363 ~ 2240119 (+) True XLOC_000047
TCONS_00000097 mRNA downstream 42546 2260407 ~ 2299553 (+) False XLOC_000048
TCONS_00000103 mRNA downstream 84100 2301961 ~ 2394973 (+) False XLOC_000050
TCONS_00000105 mRNA downstream 84113 2301974 ~ 2409126 (+) False XLOC_000050
TCONS_00000106 mRNA downstream 84113 2301974 ~ 2444210 (+) False XLOC_000050
TCONS_00000069 other upstream 335804 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 396849 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 406018 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 410648 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 553612 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000098 other downstream 54400 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 57744 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 68988 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 84097 2301958 ~ 2302623 (+) False XLOC_000050
TCONS_00000104 other downstream 84111 2301972 ~ 2441683 (+) False XLOC_000050

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_00255175_00294177.mRNA True 1008 mRNA 0.59 6 CI01000299 255175 ~ 294177 (+)