RNA id: XM_022679784.1


Basic Information

Item Value
RNA id XM_022679784.1
length 3826
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC103037315
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26323820 ~ 26345682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttaatgGCCGGGTCGCTCTTTCACATCATTTAATCTCACGGTttatttttctcattctctctctcagattcaCAGAAGAGTGGAGCCGCTCTGTTGGGGGTTGAGGggtggaggagaggagaaaaagCAGAAGTAACGTTAGCAGAAGTTAGCGcgcgctctcacacacactgcaggttATATTACTCACCTGACTGAGGAGCCCAGAgctcagctgtgtgtgtttgtgtgtgagaggtgtgtgtggggtgttaACCGGCTGGTTAGCTGTTTGTGGAGCTGAACGGAGATGGATACGGCGGATTTGCGGAGGCTGTTCTCGGCCTGTGACGGGAATAAGTCCGGGAGGATCGAGTATGAGGATTTTATCAGGGTCTGCCGGGAGCTGAGCGTTCCAGCCGGAGACGTGCGGACTTTATTCAGTAAGTTCGACGTGGACGGAGACGGCTGTATCAACTACAGCGATTTCTGCTCGAGTTTCAACGAAGTGTCTGAAACCCTCAACCTGGCTTCCCTGGGCAGCAGCGGGCAGTGCCAGGCCAGCGCCTGGGCTGAGTTTGAGAACACCCTGGACGGAGATGTGGCCTACTATCTGGGGAGATTGGGGGATCCTCTCGGTGAGCTGTATCAGGAGATCCATGCCACATCAGACATGCTCTTACTACAACAGTATGAAGATCTGATCAAAGCTCTTGTGCTGGAGAGCAGAGAGCATCGAATGGAGAGTGAACAACTGGAAACTAGTCTCAGAAGGAGTGAGGAGACTGCGAGCTCTCAGATAGTTGAGCTGGAGGAGGATTTACAGCGGCAGCTGACCCGCACAGAGCAGAGGGTTCGAGAGGAGGAGCAGAAGAAAATGGAGGGGACCCTTGCCATGCTCCAGATCAAACATGAGAATGAACTGGCAGACCTCCAGGCAGCAGTGGAGAGGCTAACAGAGtATCAAGAGGAGACAGAGTTAAACAGCCCCAGAGAAGACCTCATCAAATTAAGAAAGAAAATCCGAGAGGTGACGCAGGAAAATGATGAGCTTAGAAGTTCCCTCCTGAAGGCCCAAATGAACATCTCAGTTCTGCAGGTAGAATTGGACAAACTAAAGAATGCATATACTGATGAGAAACTTCAGCACGAGAGAGAAAGTGATGAGCTTAAGAAGATGGTTGTGGAGTACCAGTCCTATGCTGGTCATATTGAATTTCTCCAagaaatgaataaaaagttgTATGACAGTAATGATGGGTTACGGTCTGCTCTGACCAAGGATAGTTCATCCAAGAGGCGGCTTTCCCCCAAAAATGAAAAACCTCCTAGGAAACTGAAACCACTTCGGCAGAGTACTATAAATCAGAGCAGCTTTGCTAATGAAGAAGATGAAATGTCTGTAGACGGCTCCAAAGACAAGTTCTCTCTGGTGGCCCGCTGGGCGGATAAGTATCTGGACAGTGGTGTTTCTTTACAGACGGACACGGACCGAATGTCTGCCAGCAATTACGACAGTGACGAGAGCCACAACTCTGTGGAGACTGTGCATCACAGTGATTCCTACGTTCATTCTGAAATGGAGTTACAGATGTCAGATTTTAAATCCGAGATGAACGTCTCTGTATCCCCCAGCAGAGTAAGCTCGCTTGCGTCTTCTCTGCGACGTCGTCTCTCTGCGTTTCCTGTAAAGCAAACTGAAGCAGACTTGTTTGATTCTGACGGGTCACTTCCAATGTACCGCCTGGTGCTGGCCGGAGATGCGGGGTCCGGCAAATCCAGCTTTTTATTGCGTCTGAGTCTGAATGAGTTCAGAGGAGACATGCAGACCACACTTGGTGTTGATTTTCAAATGAAGAAGATGCTTGTGGATGGTGAGAAGACAAATCTTCAGATATGGGACACTGCAGGACAGGAGAGGTTTCGCAGTATTGCCAGATCTTACTTCCGTAAAGCCCACGGTGTTCTTCTTCTGTATGACGTCACTTCAGAGAGCAGCTTTTTAAACGTTCGGGAGTGGATGGAGCAGATTCAGGAGTCGACAGACGGGAACGTCCCCATGTGTGTGATTGGGAATAAAGTGGATATGAGAGCGGAGAGGCCAGAGGGAAGCTGTGTGAGTCCTGCGCAGGGAGAGAAACTCGCAATGACTTACAATGCTTTGTTCTGTGAGACAAGTGCCAAAGAAGGTACCAACATAGTGGAGGCGGTTCTGCATTTAGCGAGGGAGGTGAAGAAAAACGCCAAGCAAAGACGGCATTCAGAGTCTCAGGTGAAGCTGAGTCTAAACAGTGGGAAGAAGGCACTGAGTAACTGCTGTGGAGTCTAACCAGCTCATCACTCCACAGCCACGCATGAAGGAATGTTTACTGAAATGATCTGTTCATGAACATGTTAATATGCTATATTAATATAGACATATTATGTATATTAGCTGTTATTGTCCTAGCCACAGTTGGGcagagtttaatattttttaatgctatttaatGATCAGTGCTttgtgattttatatttttaaagaaaatgttttaaaaatattaagcgCTATGGTTTATTTCACAGGGTCTTTGTCACTGatcatgtgtgtatatatgtataagaaAAGATCAAATTCCACCTTCACTTGGATGGGGTCAGTATTTATTGGAgtgttctgtttttatattttaaatgtaccaAACGACTTTTTGTATAAAGAATTTGGTTTtggatattaaataaaatctattttgCTCAATCTTGTTGACTTCTCTCAAACCTTTGTCAGTAACGCACTGATGCCATCACTGATAATGGTCAGTAGTTTTATAGAGCAGTGATTTATACTGCTGGTCCTGGAGTAAATACTAACTATGGTTCATTGTGTAGTGCTTTGGAATTAAACCTGTCCACACTGGACCAGTCTAACTATAGACTTTCATTTTTAACAATCAGCAGAACACCTGATTCCACTTGTTTAATCAGATGGCAATACAAATGGTGATGTGGGATTGGCTGCAATGAAAACCTGCAGGAAAGCATAatcttaaaagtatttaaaatatttagatttttatccCATTTGTTTGGATAAAAATCCCCAAAAATTGGTTGACTAACATAGTGCATGTTTCTCTACTGGCCTAACCCTATTAACTAAGCTATAGCAGTATAATTGAACTCATGCTTCTCAGCATAGGTTATGATGTCACCTGGGCCAGCATTTTAACCACCTTTAACAGCCACAAGTAAAACTTGGCCTTAAGCTGGGTTGTTCTTGCAGGGACTCCGGGACAATGTTTGCATAGAAGTTTCtgtttacagtaaataacaCCTTCCCTTCCTAGAAAAGTTCCACATGGAAAGTGTGCATGTGCTCCATAATGTATTTAACTGCCAGATTCCCAGCAGATACAAATGAAGTGCACTAACCATCACCTAGACTAGCAAAGTAaacttaatttttacatttctggGGACAGTTGTGGTtttccctgctttaacacaccccGACAGGCTGAAGGGGcctgttaatgagctgattggTAGAATTGTGTGGTGTTAGACAACAAATGTGTAAGACAGGGTGTTTTTAGTAGAAACACTGAAGGAACCTGGTTTATGTAATTGAAACTAGACAGTTAATCACAGTAGTGTTAAGTGTTCAAAACACAAATTGACCATAATCAAATACCAGTAAGTAATTACAGCCTTAAGCATGCCAGACCTTTAACCATTCTGTCAACACTAcagttacattttaattatgtgctcattgtaaaattaattttgaAAGATTTGTGCAATGGCTAATCTGCAGAACCACaggtttagattaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217854 lncRNA upstream 238985 26084594 ~ 26084835 (+) True G160755
TU217845 lncRNA upstream 329849 25993720 ~ 25993971 (+) True G160746
TU217831 lncRNA upstream 376813 25946795 ~ 25947007 (+) True G160732
XR_002651266.1 lncRNA upstream 480883 25838438 ~ 25842937 (+) True LOC111194781
TU217727 lncRNA upstream 584459 25738787 ~ 25739361 (+) True G160654
TU217921 lncRNA downstream 5035 26347637 ~ 26349594 (+) True G160803
TU217922 lncRNA downstream 5192 26347794 ~ 26349295 (+) False G160803
TU217925 lncRNA downstream 21502 26364104 ~ 26364360 (+) True G160804
TU217926 lncRNA downstream 27047 26369649 ~ 26369877 (+) True G160805
TU217927 lncRNA downstream 27620 26370222 ~ 26370440 (+) True G160806
XM_007254480.3 mRNA upstream 5432 26193982 ~ 26318388 (+) True sema4b
XM_007254485.3 mRNA upstream 260506 26046342 ~ 26063314 (+) True idh2
XM_007254489.3 mRNA upstream 287120 26029799 ~ 26036700 (+) True ankrd34c
XM_007235677.3 mRNA upstream 460142 25845616 ~ 25863678 (+) True blm
XM_022679785.1 mRNA downstream 274660 26617262 ~ 26750698 (+) True LOC103021732
XM_022679786.1 mRNA downstream 413980 26756582 ~ 26789753 (+) True LOC103030887
XM_022679788.1 mRNA downstream 511278 26853880 ~ 27052199 (+) True veph1
XM_022679789.1 mRNA downstream 521957 26864559 ~ 27052199 (+) False veph1
XM_022679791.1 mRNA downstream 746273 27088875 ~ 27103594 (+) False LOC103022175
TU217233 other upstream 2203995 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 3469739 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 3700513 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 4171035 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 5312026 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 406777 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 562642 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 767069 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 2279526 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 2403094 28745696 ~ 28759007 (+) False fam219b

Expression Profile