RNA id: XM_022679745.1


Basic Information

Item Value
RNA id XM_022679745.1
length 4255
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC103027502
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22205157 ~ 22233055 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACCAAAGGAGAAAGTAAAACAGGTTTTTCACGTTGTTTCTCTTTCACTTTTAGTAGAGGCTTGAGGTTTTGGGTACTGTCTTTATTCTGGCCCCCCTCAGTTAGTCTGTAAGTGTCACCGCCCCCTCATGCACTGGGAGCTGAACTGGGAACTGCAGTATTAAAGGTCTCTACTGTAGTTATAGGGTAACGTTAACTCTCTCGGGACTCTCTTATGGGAGCTGTGTGTTCTCAGAAACGACTGGCTAGACCTGGGGAACGGCGCTGTGGCTCGACACAGTATGGTGGTATGCAGAGTTCCATAAACATGAACATCTGCGGCTTATTAACCGAAAAAGGCCAAGAAGTGCCCCTAAAGAGCGTGGAAGTGGATGTAAAAGTGAAGGGGCATATAGCAACGGTAACATCTGTCTTGCGGTACGTGAATGAGGAAAAGCTTCCTGTTGAGGCCGTGTTTGTGTTTCCACTTCCTGCTGAGGCATCTCTCTGCCACTTCAGTGCCAAGATTGCCAATGAGGAGGTGGTGGGTGAAGTGCAGGAAAAACAGAAGGCGCGGGAGATGTACGATGATGCGATAAGTTCGGGGAAGCGGGCATTCCTATTGGAGGAGAGTGGTGAGAGCCCAGATGTGTTCCAGCTGTGTGTGGGCAGCCTGCCACCTAAAGAGAGTGCTGCTGTGACTCTGATCTACGTGATTGAGCTAACTGCGGAGGCAGATCACGCCCTGCGCTTCTGTCTACCGGCTGTACTCAACCCACGATATGGACCCACCAACATTGATTCAGCCAATGTGCCGCAGGTTAAAGGAGTTCCTTCAAGGCTGGTTCCTTATACTTTGTCCCTTAGTGTCGTCATCACCTCGCCGATCCCCATTTCCAAAGTAGAATCCAACTGCTCCCTGGGGCCCCTGACTTACCTTAACACAGCTCACACTCAGGCAAAGGTGAGTCTGTCTCCTGGCCATAAGTTTGATAGGGATGTTGAGCtgctgctttattaccaggatGCTCATCAGCCCACAGCCATAGTGGAGGCAGGACTTAAGAATGCTAAACCAGGTTCTCTGATGGCTGATCCTGTGGTCATGCTGAGTCTGTGTCCAGAATTCCCTGCAGAGGTGGTGTCCTCCTGTGGGAAACGCGGGGAGTTTATTTTCCTGATGGATCAGTCTGGAAGCATGGCGGGCTCCTCCATCAGAAGTGCTCGAGAAACGCTTCTCCTGCTGCTGAAGAGTCTTCCTCTGGGATGCTACTTTAATATCTTTGGCTTTGGCTCTTTCTTTCAATCCTTTTTCACTGAGAGTGTTGAGTACACCCAGGAGACTATGGAGAAGGCAATGGAGAAGGTGGAGGCTATGGAGGCGAACATGCAGGGCACGGAGATTCTTAAACCGCTGAAGCACATCTATGGTCAAGCATACCTTCCAAATCACCCCAGACAGttgtTTGTTTTCACTGATGGAGAAGTTTGGAACACCAAAGAGATTCTGGACCTGGTGAGAACTCACTCTCTGTCCCACAGATGCTTCACTTTTGGTATTGGGAAAGGCGCCAGCACTGCTCTGATCACAGGGATGGCCAAAGAAGGCCGGGGCACTGCCCAGTTCATCACTGGAAGTGACCGACTGCAGCTCAAAGTAATGCAGTCTCTCAGCTTTGCTCTTCAGCCCTCTGTTGTGGACATATCAGTAAAATGGACTGTTCCGGATGGGATGTCCGTCATTACTTTGACACCGCCCCTCAATGTTCTCTTTCAGGGCCAAAGAGCTTTACTGTATGCTCAGCTCACAGGACAGAGCTCTGGGAACAATGAAGGAACAGTCACTCTACACTACAGCCTGGCAGAGAACCCAGTGACAAACCAGCTCAGCTTCTGCCTTAAACCTTCTGAAGACACTGGGCTGGCAGTTCACAGGCTGGCAGCTCGGGCTGTAATCCAGTCTTTGGAGAAGGAGGAGAGGCAGTCGAAGGacgacagtgtgagagagaaggtGGTGGAGCTCAGTGTTCAGGCTGGAGTCAGCAGCTCCTTCACCGCCTTCATATCCGTCCACAAGGGCAGTGGGCAACCAGTCAAAGGGCCTCTGGTGAAGAGGACAGTGCCAGTGGCCCAAGGGTCCTatgTGGAAACTGATGGAGCACCATCCTTTAGAGCACGTAGAGCACGggGTGCACCCATAAGATTCTTAAAAGCACAAACAACAGatgTGGAACCTGATGGATCACCATCCTTTATGGCATGGAACGCACGGGGTTTCCTAGAAACAGATGGAGGTTTTCCCAAAGAACAAGcagctTCTCCTGTCCAGAAGGACCCATACTTGAAGCTGGTATCACTCCAGAAAGCTGCAGGGTTCTGGGAGCTGAGGACTGAGCTTCTCGGTGTGTTTAGTAAGACAGAGGAGGAACTGGCCAAGCAAAGGCCTGCCCAGGTGGATGATGCTGTGTGGGCTACTGTTCTGGCACTTATCTGGCTCCATGGCTTTAGGGCAGCAGATCAGGAAGAGTGGAAATTCATAGCCATGAAGGCCACGTCCTGGATCCAGTCACAGAAAGtgggAAACCTGGCTGAGTGTGTGCAGGCTGGAAATGCTCTGCTTGGGTGTCAAGTGAAGGAAGACTGCCTTGGGTTCTGAGTACTGTTCGCTGTCTGACCTCAATCTGACCTACATGCTTCAGTTTTTATTATtggctatttatttatttcagtgttggctacattatttttatatccattctttttttatccagGTGTATAGCTCAGCTGAATGTACTGCTCAAATTGACCACAAACAGATAtgtttacctgtaataaacataacattttgACATTTGCTTGAGCAGTCATATAGTgataaaaatgaacagaatgTCAGAAGCTAGGCTGCGGAAAGTATAAGtatactctttttttaatattacagaaagtgtgcttAAATGAAAGTGTCCTTGTCAATCTAATGTGATTTCCAGGATGGATTATAACTAGAGTATGTACATGGAAGTTTGCTCAGTAAAATCAATGCAGTctgtgtaaatacagtataactATATTAGAGACTAAGGGTGATTCGACTTGTTAGTTCGGTCAGAACCTAAATAGCAGGTATGAAAGGTGCGAAAAACCATGGCTCAGACACCACAGGACTTAAATTATTCTGACCAAAAGAGGATCAACTGAAGCATGGTACTGTTTATATTAATTTGAAGCAGGCTATCATCACCCATTAaccaatagaagaagaaaaagaaagaagcagtGCTTTTCCGAGTACCCTTGTCATGCAGGCACATCATGCAGCTGTATGGGTATAACAGATTATGCTAGTGTTTcctatatctactgtaactgtagaatagTCCTTATTcatgaacagaaataaaaggagtCCAAGGGAAATTTGTTACACTCTTTCTGCTGTGAGACACACCTGCACTCGAAGGGGGTTAAATTCTAGCAGGGAGGCAGCATTCAGCATAACATCTGGCAAGGAAACTGGCCGAAATGATAACAATCTACAAACAAGTAGTATGTCAAGTATGAGGAGGCACCATCCAAGCAGGTGATGACAAAATGTAGTACTTAGTcagtaaactgcagtgtgaaaccgaaactaaaTGGACTAAATGtactaaatacaatataataaactcGTGAGGATTGGTCTGGACTTTGGTCCAGACTTTCGGGTAtgtaaactctaaaactcttaTATACGATGGTTGATCATTATATAAGTCCTACTATTATCAGATCCAGGAGAAAACAGACGTGGCACATCTCTGCCTGTTTGTTACAGCAGATGGTACTTGTTTTGCCAGGCCTGGTACTGTTACTAGGTTACAGATGCATAAAGTGCATCCTCTCAGCCAAAGACATGGTGAGGTAGGAGGGGACTGTGGTATGATTCTGTTGTAATGAAATTGGAGCCGGGTTTCTGTTATTCCTGTGGTTtaacacacaacacagcacatGCTCctattctctcacacacacttcctgtTTCTCACTGGGtgttatttaatagatttaaacacacaccagGGTAACTCTGTTCACACCATGAATGTCCAAATGTTAGTGCCAAGTTAATGGcacagttttgtttgtttgtgctttttttatgGTTACatgaacaaatattttttctttaccaaAGATGGTTCCAATATAGCTATGAGTATTTTAAGCCTTAAAACAATTTCCCTACCTTTGTTACAgtgcataaaaacataaattattttatgaGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216761 lncRNA upstream 26597 22178204 ~ 22178561 (+) True G159939
TU216758 lncRNA upstream 38782 22165921 ~ 22166376 (+) True G159936
TU216737 lncRNA upstream 77479 22126544 ~ 22127679 (+) True G159925
TU216731 lncRNA upstream 95968 22108075 ~ 22109190 (+) True G159919
TU216712 lncRNA upstream 286164 21918749 ~ 21918994 (+) True G159904
TU216784 lncRNA downstream 39642 22272697 ~ 22276949 (+) True G159961
TU216857 lncRNA downstream 75850 22308905 ~ 22378490 (+) True G160015
TU216905 lncRNA downstream 326781 22559836 ~ 22561902 (+) True G160051
TU216895 lncRNA downstream 343863 22576918 ~ 22582171 (+) True G160041
XR_002651265.1 lncRNA downstream 389291 22622346 ~ 22622773 (+) True LOC111194780
XM_022679980.1 mRNA upstream 110905 22090563 ~ 22094253 (+) True LOC111194835
XM_007250997.2 mRNA upstream 120659 22081194 ~ 22084499 (+) True LOC103026427
XM_007250996.3 mRNA upstream 125400 22077478 ~ 22079758 (+) True LOC103026111
XM_022679743.1 mRNA upstream 143348 22000660 ~ 22061810 (+) True LOC103025486
XM_022679979.1 mRNA upstream 505437 21631760 ~ 21699721 (+) True LOC103031832
XM_007251016.2 mRNA downstream 1237 22234292 ~ 22260071 (+) True itpkc
XM_007251004.3 mRNA downstream 49639 22282694 ~ 22287641 (+) True snrpa
XM_007251005.3 mRNA downstream 69299 22302354 ~ 22392575 (+) True LOC103028656
XM_007235619.3 mRNA downstream 489665 22722720 ~ 22727446 (+) True rnf7
XM_007235620.2 mRNA downstream 495478 22728533 ~ 22736629 (+) True LOC103026853
TU216738 other upstream 52373 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 1193364 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 1468109 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 2018239 20185516 ~ 20186919 (+) True G159666
TU215931 other upstream 3628721 18526386 ~ 18576437 (+) False necab2
XR_002651264.1 other downstream 389784 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 620357 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 1886074 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 4516324 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 4672189 26905244 ~ 26907627 (+) True G160919

Expression Profile