RNA id: TU248019


Basic Information

Item Value
RNA id TU248019
length 2394
lncRNA type read_through
GC content 0.44
exon number 4
gene id tmsb10
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6352175 ~ 6408023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgttttaaatttaaaagagcACTATCCTGAGGCTTGGTCTTGCAGTTTGGTGCTGGTTTGTAGCACAGTGCGCAGTATAATCTGAGTTTAAACCTGTGTTCAGTTCCAGCCTAACTCCCAGCCGCCTGTAAGATGGCCGACAAGCCTGATATCAGTGAGATCTCTCACTTCGATAAGAACAAGCTGAAGAAGACCGAGACTCAGGAGAAGAATACTCTACCAACCAAAGAGACAATTGAACAGGAGAAGCAGAGTGTCTAAGATGACTACCTCCCCCAGTTCATCGCCAAGGACAAAATGGGGCTTCTGGAACATTTTTTCTCATGGACATAATTGTGGCTTCTCCTAACCAGCAGTACCACCTCTTGTATAAAGCTGAAGCATGACTTGGAGTTAATGGAGGCCTACTCTGAGCATGAACTGGGATGTACAGCCTTGTAAAGGGATTGAAGTATGGGGGTGGTGGTACATGCTCTCTTATGGAACTTGGTGAAATAAAGATATTGCACCTGTGACTTCaaaaaaaaaaaaaaaaacgtctcacACTCAGTGTTACAACAGCCTGAAAACTCTTCCAAACGTTGGATGTTCCACAGCGTAGCAAAACGTAGCGTAGCACTGTTAACTTGTGTCCGCGGTAAACTTttacacatacatttatatatattactcTGTCTCCATCATAAATAGCTTTAAAtctgacaacaaaaaaaaaaacgcacacTCGACCAGGGCATTCTGTACACAAGTGATTCGCATTTATCTACAcccagaagaaaaagaaaaaagaagaagaagaagaagaaggagaaggaggaggagaagagtggCTACTGCCGTCCAATCAGCTCCGTTATAAAACCGTTAAAAAAACTACAACTCCGCCCCTCCTGTGTGCTGCTCAGTATACAACATGATTACAATCCAGTGTATTAGAAAAGAGTCCAGCTTGTACTTTGTCAGAATCTCGTCGTCACAACGTCAGCAGGGATTGAGCTGAACTGTACATCTTGAttagcaacaaaaaaatgatGTTAGCTTTGAAAGCACTCCAGTTGATTTGATTGGAGATCCAGATCCAggactggttggttggttggttggttgttatGGTTAAATTCCCTTTAacgtaatgaaaaaaaaatggtgtctgtggtgtgttgaggtatGTGTATAGCATTGatttgtggttggtgtggttcTCGGGTTTTGTTAAACTAAAGTACTAGTACTCCAAAAATGTTTTCCAACCTATGCCATTtccatcactgtccaatgaaaatccaaaGAAGTATCTATGgagtcacatcaatgtcaaaggtaaaaaaaatcaatatgcGCTGAACAAAATATGTCTCTTAAGCTTCATTTTCTCCTCTCTGATGTTTTTTCCCTCTCaaattcacagttctcctcgCGCGCTATGAGAATTACCTGCGACTGCTGTTTTCGCTCGAGTGtagaaaggggtggttttgacagtttgtggGTGGAGTTAGAGTCTCCTCCCTCAGCCAATGTTAtcggctgatatctccagggtttgtgaagGACCGCCTACAACCAAAAGCCGGAGGAGGGCGAAGAAAAAGACTgttttgtttggatgttagcatagcctgcaagctaactctcctgctgtccttctcCTTCCCACTTCTTCAGCTCTTGGGAGTAGGCGGTCAGTCACAAGCCCTGAAGATATTTGCCAATAGCATTCACTGAGGGAGGAGACCCTGGCCCCGCCCCCAGAACGTTGAAAACcacctttttttctgcaatCTTCAACAAAAGCCTCACTTGAGCAATAACAGCAGCCTCAGGTAATTTGAGAGGACTCAAAAAACTCTTTAAACCACCTCTTTGAAATTATAAATGAAGGGCACCTAACTTTTCACACCTAAAGTGTGAATCTGTCAACGAGTTTATAACCTTTAAGCACTCACCCCTTggaacaagaaagtaaatacaggaagaagctCCTGTGTTCATAGATGTAGTTTTTATCTAAATGTATCAAAATCAGGATCAATTTAGCCTGGATTGGtcttttttggttttaaaaagtgtgtgtctgagtgtctgCATAAAATGACGTAGGCAGAAAGTTGTCGATGGGCTTGGATGATTGTGATCGGCAGGAAAACGACACGTGTACTCTTCTTCGCTCTATTCTTTCTTCtccttccttcttcttcttgtccTCCTCTTCCTCGTGTGCAGGCAGTCTCGTGTGGGCTGTCGCTGGTGCTAGCTCGTCTGCTCTTCCTCTGTCTTcctctgctcctcctcctcctctcttggGCTTGGTCAGTGACGGTCGTAGGCAGTGGCAGTCGCTGCGGCAGCAGGTCCTGGCCCCCGCGTCGCTGCGCTGTAGTAGTATGGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247894 lncRNA downstream 151986 6199682 ~ 6200189 (-) True G183058
TU247835 lncRNA downstream 388825 5962458 ~ 5963350 (-) True G183016
TU247755 lncRNA downstream 516612 5834991 ~ 5835563 (-) True G182956
TU247748 lncRNA downstream 637056 5714694 ~ 5715119 (-) True G182951
TU247744 lncRNA downstream 637895 5713887 ~ 5714280 (-) True G182949
TU248034 lncRNA upstream 66967 6474990 ~ 6552368 (-) False G183134
TU248030 lncRNA upstream 98404 6506427 ~ 6535456 (-) False G183134
TU248031 lncRNA upstream 98404 6506427 ~ 6666542 (-) True G183134
TU248033 lncRNA upstream 98404 6506427 ~ 6551560 (-) False G183134
TU248032 lncRNA upstream 114973 6522996 ~ 6552368 (-) False G183134
XM_022681743.1 mRNA downstream 115064 6150690 ~ 6237111 (-) True zcchc7
XM_022682137.1 mRNA downstream 211822 6127155 ~ 6140353 (-) True LOC103028109
XM_022681733.1 mRNA downstream 251732 6052735 ~ 6100443 (-) True frmpd1
XM_022681732.1 mRNA downstream 303685 6030710 ~ 6048490 (-) True pgm2
XM_022681730.1 mRNA downstream 344883 5928738 ~ 6007292 (-) False tbc1d1
XM_022681755.1 mRNA upstream 14488 6422511 ~ 6426583 (-) False LOC111195197
XM_022682140.1 mRNA upstream 727752 7135775 ~ 7149290 (-) True LOC111195268
XM_022682142.1 mRNA upstream 756415 7164438 ~ 7168366 (-) True LOC111195269
XM_022681771.1 mRNA upstream 772855 7180878 ~ 7188349 (-) False LOC111195200
XM_022681770.1 mRNA upstream 772855 7180878 ~ 7188349 (-) True LOC111195200
TU247875 other downstream 239083 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 1056459 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 1139024 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 2801762 3547633 ~ 3550413 (-) True G182501
XR_002651509.1 other downstream 2897589 3442566 ~ 3454586 (-) True LOC103039001
TU248021 other upstream 14080 6422103 ~ 6426508 (-) True LOC111195197
TU248263 other upstream 1082483 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 3247290 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 3437799 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 4898266 11306289 ~ 11306821 (-) True G183880

Expression Profile