RNA id: XM_007242968.3


Basic Information

Item Value
RNA id XM_007242968.3
length 520
RNA type mRNA
GC content 0.45
exon number 3
gene id tmsb10
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6352175 ~ 6408023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgttttaaatttaaaagagcACTATCCTGAGGCTTGGTCTTGCAGTTTGGTGCTGGTTTGTAGCACAGTGCGCAGTATAATCTGAGTTTAAACCTGTGTTCAGTTCCAGCCTAACTCCCAGCCGCCTGTAAGATGGCCGACAAGCCTGATATCAGTGAGATCTCTCACTTCGATAAGAACAAGCTGAAGAAGACCGAGACTCAGGAGAAGAATACTCTACCAACCAAAGAGACAATTGAACAGGAGAAGCAGAGTGTCTAAGATGACTACCTCCCCCAGTTCATCGCCAAGGACAAAATGGGGCTTCTGGAACATTTTTTCTCATGGACATAATTGTGGCTTCTCCTAACCAGCAGTACCACCTCTTGTATAAAGCTGAAGCATGACTTGGAGTTAATGGAGGCCTACTCTGAGCATGAACTGGGATGTACAGCCTTGTAAAGGGATTGAAGTATGGGGGTGGTGGTACATGCTCTCTTATGGAACTTGGTGAAATAAAGATATTGCACCTGTGACTTCA

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248015 lncRNA downstream 39024 6356281 ~ 6367173 (-) True G183121
TU247894 lncRNA downstream 206008 6199682 ~ 6200189 (-) True G183058
TU247835 lncRNA downstream 442847 5962458 ~ 5963350 (-) True G183016
TU247755 lncRNA downstream 570634 5834991 ~ 5835563 (-) True G182956
TU247748 lncRNA downstream 691078 5714694 ~ 5715119 (-) True G182951
TU248034 lncRNA upstream 66969 6474990 ~ 6552368 (-) False G183134
TU248030 lncRNA upstream 98406 6506427 ~ 6535456 (-) False G183134
TU248031 lncRNA upstream 98406 6506427 ~ 6666542 (-) True G183134
TU248033 lncRNA upstream 98406 6506427 ~ 6551560 (-) False G183134
TU248032 lncRNA upstream 114975 6522996 ~ 6552368 (-) False G183134
XM_022681750.1 mRNA downstream 2401 6380403 ~ 6403796 (-) False melk
XM_022681749.1 mRNA downstream 2401 6380403 ~ 6403796 (-) True melk
XM_022681743.1 mRNA downstream 169086 6150690 ~ 6237111 (-) True zcchc7
XM_022682137.1 mRNA downstream 265844 6127155 ~ 6140353 (-) True LOC103028109
XM_022681733.1 mRNA downstream 305754 6052735 ~ 6100443 (-) True frmpd1
XM_022681755.1 mRNA upstream 14490 6422511 ~ 6426583 (-) False LOC111195197
XM_022682140.1 mRNA upstream 727754 7135775 ~ 7149290 (-) True LOC111195268
XM_022682142.1 mRNA upstream 756417 7164438 ~ 7168366 (-) True LOC111195269
XM_022681771.1 mRNA upstream 772857 7180878 ~ 7188349 (-) False LOC111195200
XM_022681770.1 mRNA upstream 772857 7180878 ~ 7188349 (-) True LOC111195200
TU247875 other downstream 293105 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 1110481 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 1193046 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 2855784 3547633 ~ 3550413 (-) True G182501
XR_002651509.1 other downstream 2951611 3442566 ~ 3454586 (-) True LOC103039001
TU248021 other upstream 14082 6422103 ~ 6426508 (-) True LOC111195197
TU248263 other upstream 1082485 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 3247292 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 3437801 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 4898268 11306289 ~ 11306821 (-) True G183880

Expression Profile