RNA id: TU248031


Basic Information

Item Value
RNA id TU248031
length 3418
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G183134
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6474990 ~ 6666542 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaaataaatatgtgttttattttatgaaatactgacaacatttctcccaactttcaaatacaaatattgttattcagagcatttatttgcagaaagtgagacatggtcaaaataatgaaaaagatacAGTGCTTTCACACCTCATATAAGCTGTTAGTATGTCGCCTTCTGATGgttaaatctttaaattaaacagcAGTAAAATTCAAggttttcattcattaatttccCCTAGCATACAAAAGGTTACAAAATAATGTGAGGGAAATACAGAGATAATTTGAGATAAAAATTGTTTTTCCTTATACAGGGGAATAATACACAGTTTGTATACAATGAGTTTATACGAAGTTCCAGAATTCCGCTCTTTGTCTATATGTTTTCTGGCTGactttgtttcttattttatactAAGAGTTTCCTTTTTCACACCTcccaaaaaataatttgtttggtCTCTTCTGATAGTACCTTGATATCAACTTGGGCTGAAGAGTCACcgtttgttttattgtaaataatctTCCGGACAATGGAATGGCTAATGTCATATTGTTCTGAGATCCTTTTACATATCTTTAAATACCTCCTCTTCTTTTTCAATTGCCGTTGATATAACTTTACCTCATAGCACATTCAGAGGCAAGTGCTgcgacccagctctgatacatcagctaacagatgcctgtgctgacgaCATTACATTGGGAGTAATGtgaggagagagtgccatctacccatccagagagaacATGTcccattgtgctctctcagactccggctgctgatggcaaagggCAATGcctgggatttgaacccacgATCCCTGGATCGTAGTGGCAGCGGCTTAGTCTGCTTAATCACTCAGAGCCCAGCTCATAGTCCAActattagaggttagatcgggcccaaaaaatccaacccgacccagcccgagcccatgcgcgttctgcccgagcctgacccgacccgaaccataaactgtcattatgagcgaaatatgatcagaattaagctaataacactgtaacatagaagcatagaactattatttaattaaaatgatttttaagaacagctaaacacagtgctgcaggtcaaacgcggaggatttgcgtgttctgatgtgagctgctcacaggtaaaggttctctttgatctcctcgtgctcatattctagtcccatacataattctgcagcttcctctgtgttttctgtcgGATTTTGTGGCTAGCGCCAGCGCTTacaacaccgcggaccgcgaggtgccgaatccgctactgaatccgactcccgctttgCGGACAGAATCGGCGCAACACCCCCTGCTGTACAACCGCGGGAGTGATAACagcttataaataaaatagtttagtttcactttcagttttcgttattttcgttattttatttaaaaatacaaatataattaaaaaacagatgcctacatctcagactattttctggagcccgacccgaccctgcccgaggaatgtggtgggaaatctcgacCCGATTTCtggtcgggcctcgggtcaggtcgggttcgggcagagaatctaagctctaccaaCTATTGATGCTGTACTTTCATGGCCTATAAACACAGTAGTTTCAATACACTGGAAGCCAACCAGTGCCCCTAGTGGTTGGGCATCACTTTTGCATGTGCTGGCACACAAAGCATTAGGTTACTTTGATATATAttgaaaaatttaataaattatcatGTATATTAAACGTgaacagttttttctttttagtttttttttacttcttaacTTTCAGCCTGCTGAAATAACCCAGCACAGAGTAGGATGATTCCTGGGGCAGGTGATTCTGCATGCCCTTCAGCCTCTGAGCGGACTCCAATTCTCCAGCTTTTTCAAGTCGGGGAATCAAGAAGTCTAGATGTCGAAGGGTGAAGGCGGAGTCTGGTTTTAGTGCACAGTCACACAGTTTGATGATTGCCTGGTAGGCATTTTTCACTgagttcctctgttgtttttcaTTCTCATCCAGGAGCACTTTCAGGCTTCTTTCCACGTTGGTCATTTCTTCTTTCTTGCTCAGCTTTTCTTGGTGCTTTGTGACCACATGTTGGTATTTCTCGCTGTcatatgtaacattttttttttcagtatgcaACGTCCTCTTCAGGTCTGCAAATGTGACTGTTTCGTTTTTTTCAAAAGTTTTGTATTTCTTGCCCTCTCTGACATGTTTGGAGGTGTAACACCCACACGCGGTGCAGTAATCTTTCTTCATTACCTCACAGCTCCTGGCACTATTGGCAATCATGATGCAATAGAGATGGCAGTTCTCCTGACACTCGCTGCAGGCTGTCACTTTGCGATTGAACCATAAGCCTCGAGTGATGGGCACCTTCTTTTTGTAAACTTTCTTGATAGAGAAAGGAAAATTTTCATCCATCATAATCTTTTCTTTGTACATTTGCAGCGCTAGCTGAATCATAGTCAGTTCAATCAATTTTTGCTCAGTGAACTTAATGTGTTCCTTCAAACTCTGAACACAGGCCTCAAGCTGCATGCGCTCCCTCAGAACGCTGAGAGTCAGAGTTAAGCTTTTACTCTGCTGTAATTTCAGGAATTCAAAAAACTCCTCCAGACTGCTTTCCCCCATTTCCCAAGATGATTTGAACACACGCTGATATTTGGCTGTGTGTTTCTCAGGCTGACGGTTGTTGAACAGGAAGTGAACAGGTTGGTTCTCTGCATCGTGGCAGCAGGGGatcttttctttctctacaGCTTTCAGAACATTTGATGGAGGTAATCCATCTGAGTGTGTAATAAAAAGCACTATGTTCTCTCCTATGTCTTTACCAAATAAGGAAAGAACTCCTTCAAAGATGTAGCGTTGAGCATCTGAGATTCTGTTCTGAGATGCTTTCAGTACAAGACACACAGCATCCAGATCCTTCACTCCAGTTTCATGTAGAAACAGTTTATGCAGATTCTGAGGAATTTCCATGTCCTTATCTATTCCCCTGGTGTCTCCATATCCTGGAGTGTcgatgatggagagagagaagggtttCTGTTCAGAGAAGATCTCATACACAGTGATTTCAGATGTTTGAGATTCTGTTTgatccattttttcttcttctgtgatcTCAAAACCACACATTATCCTCAAATTTCACCCCCAGATAGTAGTTGACCATGGTGTTGATCAGAGTGGTCTTGCCTGTTCCAGTTTCTCCCACCATCAGACTATATTTAGTCTGCATATTTGAGCATTTCTGTCCAAAGGTCCACTTTCTGATCTTGCCACTCTCATCTAGATTACTTTTTGATGTGTGAAGACGACGCACTGCTGGTGGACCTGGACTGAGTTCAAAACTCTTCTGCATTAGATCATTTAAAGCTGACGATGCATCGCCCAGTCTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248019 lncRNA downstream 98404 6352175 ~ 6408023 (-) True tmsb10
TU248018 lncRNA downstream 98404 6405724 ~ 6408023 (-) False tmsb10
TU248015 lncRNA downstream 139254 6356281 ~ 6367173 (-) True G183121
TU247894 lncRNA downstream 306238 6199682 ~ 6200189 (-) True G183058
TU247835 lncRNA downstream 543077 5962458 ~ 5963350 (-) True G183016
TU248097 lncRNA upstream 210605 6877147 ~ 6880030 (-) True G183188
TU248202 lncRNA upstream 498851 7165393 ~ 7215230 (-) False LOC103028119
TU248264 lncRNA upstream 813839 7480381 ~ 7489159 (-) True G183306
TU248267 lncRNA upstream 837719 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 850211 7516753 ~ 7517491 (-) True G183311
XM_022681755.1 mRNA downstream 79844 6422511 ~ 6426583 (-) False LOC111195197
XM_007242968.3 mRNA downstream 98406 6406197 ~ 6408021 (-) False tmsb10
XM_022681750.1 mRNA downstream 102631 6380403 ~ 6403796 (-) False melk
XM_022681749.1 mRNA downstream 102631 6380403 ~ 6403796 (-) True melk
XM_022681743.1 mRNA downstream 269316 6150690 ~ 6237111 (-) True zcchc7
XM_022682140.1 mRNA upstream 469233 7135775 ~ 7149290 (-) True LOC111195268
XM_022682142.1 mRNA upstream 497896 7164438 ~ 7168366 (-) True LOC111195269
XM_022681771.1 mRNA upstream 514336 7180878 ~ 7188349 (-) False LOC111195200
XM_022681770.1 mRNA upstream 514336 7180878 ~ 7188349 (-) True LOC111195200
XM_022681769.1 mRNA upstream 525049 7191591 ~ 7201973 (-) True LOC103027790
TU248021 other downstream 79919 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 393335 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 1210711 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 1293276 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 2956014 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 823964 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2988771 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 3179280 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 4639747 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 4736165 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile