RNA id: TU248097


Basic Information

Item Value
RNA id TU248097
length 1576
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G183188
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6877147 ~ 6880030 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACATTATAGGCAactttaatacagtttaatacaGACATCATTGCAGTATAATAATTGTAGAGACAAACTACGTTTCCATTCGTTcccaaatggaaaaaaaaatacagtactttccGTCAACGTTTTCCAACGTTTTACTTTTCCGCCAACTGAGTAGAAGTTCTTTCCAGTGTAAGAACTGCAATAGAGTCCATTTTTCAGGTGCTGCAGTTTCTAGATAAGATTCCCTTTTAATGAAGGAACTTCCGATAACCAGTATGAACCAAGGAAGAAGAAGACTCTACATCTACCAACATGAATAAACACAACACATTATTACTGTCTTCACTATCAGAGTATTGCTAGCATACTGGATATAATGCTCATGTTAATGGCTGAACCAGTATGGAGTCATGTTGAGTAAGTTCAGAAGTTCAGTACCAATGTTTCGAAAAGGACACCAACCAATGGAAGTCTCTTCTTCTGGGGTGTGACAAAATTTAATGCCTTCATCgtccaaaccccccccccccaaaaaattgcATCTAGAAGGAAGTGCAAAGCAAGATTGCAAAGCTAGTATTGTATAacaagttgtagaggttcctaatggtctTCCGCCATTTATTTCTCAGTTATTTCCTTCTGGATGCAACTCATTCTTTGACGAAGAGTGTAGTACGTTCTCCTCAGATGATCCAAATCCCAAACAAGGCCTTGTTTGATTGGTTGGCTGGAAGCTGATGGGTTAAAACAAGTCTGAAGATGAGCAGATGTCTCCAGGTGTGTTGCCGAAAACTGCCCTCCGCCCGAAACAGGCTTGAATGGAGGTAATGGAGGttaaaggaagaggaagagtgagcTTAACAGTAAGCTAGCATAGCAGTTCTCCATTGTCAACACGGTCCAGGTAGTTAATTAAAGGGATATTTTACTTTGGAAGAAAGAGCTTCTCAACCAGGGAAGAAGTCTGGTAATGTGGCAAACATGGTGCAGGTAGGGCCAGGCTGGGATGAGTCAGAATTTGGGGAATGGCGTCTATACGTATATGGATGATATGACTTTAATTATGATACATACAAGGTTTTGAGCTGTGTGTTAATGAGGTTTCTAATGGGGTTAGTATGAATTTTTGAGCTGTGTGTTAATAGGGTTTCTAATGGGGTTAGTATGAATTTTTGGGTTGTATGTTAATAGGGTTTCTAATGGGGTTTATGTGAATTTTTGAGCTGTGTGTTAATGAGATTTGCAAAGGTAGATAGTAtgaattttttaagttttttttttattattatttctattgaGGTTTGAAATGGTGTTGGAACCCCATAAAGAACTCATATAGGGTGCATAGAAATTATGGTTTTATTCAGGATTTTATTCGGGATCAATAttatatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagagtgttTAAGGAGCAGTGCTCAGGTACATCTTCAGAGCTGGAGTGAAGATGAGGATGGTGCCGAGCACGGAAACGGTGAGGAAGGCCCACAAGAAGATCCGGTCCAACACCTGAGCCACAAACTTCCAATCTTGGACCACCTAAAAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248031 lncRNA downstream 210605 6506427 ~ 6666542 (-) True G183134
TU248064 lncRNA downstream 240835 6592022 ~ 6636312 (-) True G183158
TU248058 lncRNA downstream 315546 6536195 ~ 6561601 (-) True G183152
TU248034 lncRNA downstream 324779 6474990 ~ 6552368 (-) False G183134
TU248032 lncRNA downstream 324779 6522996 ~ 6552368 (-) False G183134
TU248202 lncRNA upstream 285363 7165393 ~ 7215230 (-) False LOC103028119
TU248264 lncRNA upstream 600351 7480381 ~ 7489159 (-) True G183306
TU248267 lncRNA upstream 624231 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 636723 7516753 ~ 7517491 (-) True G183311
TU248256 lncRNA upstream 639116 7519146 ~ 7520907 (-) True G183299
XM_022681755.1 mRNA downstream 450564 6422511 ~ 6426583 (-) False LOC111195197
XM_007242968.3 mRNA downstream 469126 6406197 ~ 6408021 (-) False tmsb10
XM_022681750.1 mRNA downstream 473351 6380403 ~ 6403796 (-) False melk
XM_022681749.1 mRNA downstream 473351 6380403 ~ 6403796 (-) True melk
XM_022681743.1 mRNA downstream 640036 6150690 ~ 6237111 (-) True zcchc7
XM_022682140.1 mRNA upstream 255745 7135775 ~ 7149290 (-) True LOC111195268
XM_022682142.1 mRNA upstream 284408 7164438 ~ 7168366 (-) True LOC111195269
XM_022681771.1 mRNA upstream 300848 7180878 ~ 7188349 (-) False LOC111195200
XM_022681770.1 mRNA upstream 300848 7180878 ~ 7188349 (-) True LOC111195200
XM_022681769.1 mRNA upstream 311561 7191591 ~ 7201973 (-) True LOC103027790
TU248021 other downstream 450639 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 764055 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 1581431 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 1663996 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 3326734 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 610476 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2775283 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2965792 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 4426259 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 4522677 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile