RNA id: TU248256


Basic Information

Item Value
RNA id TU248256
length 963
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G183299
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7519146 ~ 7520907 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCCAATACTCATACAGAGGGAAccacagtaaaatgtgttttattaatgaCAGGAATTCCTTGTTAAAACCTTGGACAAGGAACGGGCTTGGATCGGTCTGATCCGCAGTGACTCGGAGGTCGCCTGGGAATGGGTGGATGGATCTGAACTGACCACTAACTACTGGAGCCGTGGAGAACCAAACAATCATGAAGATAGTGAACATTGTGCTGAATTCCGTGGGATCCCAATTAAAAACAACTGGAACGACAGGCGATGCACCATCACAGGAGGCTGGGTCTGTGAGAAAACCATCTTAAACTAGATGCAGGAAGTGGTAATGAGAATGCTGTCTGGGACTTGAGACTGAGCCTGAGACACTGGCTGTGCTACAGGGATGGTTCACATGACAATCAAAATTTGGGAAGTTTGAGGTACAGTATCTATTAGGGGATCGGAGCTGAATTGCGCATGTGATCCTCTACTCGATGTGTAACTAATGAAACTGGAAATTCAGCAGCTTCTCTTCTGCACTTCTCTTTTTCTAGAGGTCAGGTTCATTCATAAACTTTGAACGTGACACTCATATGTCTGGTCTTCAGCCTCACAGAGTCTGATAAGTGGGTGATGAGTCATTATAGCCCCTTTTTATTTCTCACAAGTAAACTTGTGtcaaaattcagtttttaataaagggagaaaaagagagaaaacaatccaaacctacatggccctgtgtaaaaaaaaagttaccccaagagtgcagtgatgactcatccaagaggtcacgtATACCCTACATGGCAGAGTGCCAGGACTAAAACCACTTCTGAGCAAAAAAACAACGTTAAGTCCCGTCTCAGTTTTGgcagaaaacatcttgatgatccccaagacttttgggaaaatactctgtggactgGCGACACAAAAGTTGAACAAACACTTGAtcgcagttgttgctgctaagggtggcctaatc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248269 lncRNA downstream 1655 7516753 ~ 7517491 (-) True G183311
TU248267 lncRNA downstream 12790 7504261 ~ 7506356 (-) True G183309
TU248264 lncRNA downstream 29987 7480381 ~ 7489159 (-) True G183306
TU248202 lncRNA downstream 303916 7165393 ~ 7215230 (-) False LOC103028119
TU248097 lncRNA downstream 639116 6877147 ~ 6880030 (-) True G183188
TU248325 lncRNA upstream 1173872 8694779 ~ 8742963 (-) True G183327
TU248323 lncRNA upstream 1181485 8702392 ~ 8742963 (-) False G183327
TU248350 lncRNA upstream 1272385 8793292 ~ 8811814 (-) False G183349
TU248351 lncRNA upstream 1272385 8793292 ~ 8799047 (-) True G183349
TU248356 lncRNA upstream 1272385 8793292 ~ 8796146 (-) False G183349
XM_022682144.1 mRNA downstream 16717 7490075 ~ 7502429 (-) True LOC111195271
XM_022682143.1 mRNA downstream 34388 7481599 ~ 7484758 (-) True LOC111195270
XM_022681761.1 mRNA downstream 60416 7419349 ~ 7458730 (-) True ncapd3
XM_022681762.1 mRNA downstream 102113 7380244 ~ 7417033 (-) True wdr19
XM_022681767.1 mRNA downstream 150912 7309521 ~ 7368234 (-) True LOC103041735
XM_022681785.1 mRNA upstream 1492970 9013877 ~ 9062826 (-) False spock3
XM_022681784.1 mRNA upstream 1492970 9013877 ~ 9062826 (-) True spock3
XM_022681788.1 mRNA upstream 2155690 9676597 ~ 9765958 (-) True prss12
XM_022681789.1 mRNA upstream 2247623 9768530 ~ 9791976 (-) True mettl14
XM_022681796.1 mRNA upstream 2384695 9905602 ~ 9953226 (-) True LOC103026071
TU248263 other downstream 17074 7490506 ~ 7502072 (-) False LOC111195271
TU248021 other downstream 1092638 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 1406054 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 2223430 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 2305995 5180523 ~ 5213151 (-) False G182810
TU248668 other upstream 2134406 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2324915 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 3785382 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 3881800 11402707 ~ 11411642 (-) True gtf2a1l
TU249404 other upstream 4674305 12195212 ~ 12196658 (-) True G184051

Expression Profile