RNA id: TU248264


Basic Information

Item Value
RNA id TU248264
length 357
lncRNA type sense_over
GC content 0.30
exon number 2
gene id G183306
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7480381 ~ 7489159 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttagaattttggggttttcatctCATCATACTCTTAGAATTAACCAATATTcactaaaaactaatttaaaatgctgtgtaatccAAGAAAATTCTTAATCCCCATCTGTTAAACTTAACTTCGAATCATACCTAATTCTTTCCCCTTTTATGCATCATGGACTAAGGGACCTATTTAAGCTCTTACAGAGTATATAAGACTGCAGGTTGAATTAGCATAtaatgggattgggcccaatGGGGCATTGGTTGGGTATGTAAAGattaatttctaaatgttttgtataatgtaaaagtttatgtattttttatttaatgcatttacaaatgaacaaataaagtGTGCAGAAATTCA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0048840 otolith development biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248202 lncRNA downstream 265151 7165393 ~ 7215230 (-) False LOC103028119
TU248097 lncRNA downstream 600351 6877147 ~ 6880030 (-) True G183188
TU248064 lncRNA downstream 844069 6592022 ~ 6636312 (-) True G183158
TU248058 lncRNA downstream 918780 6536195 ~ 6561601 (-) True G183152
TU248032 lncRNA downstream 928013 6522996 ~ 6552368 (-) False G183134
TU248267 lncRNA upstream 15102 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 27594 7516753 ~ 7517491 (-) True G183311
TU248256 lncRNA upstream 29987 7519146 ~ 7520907 (-) True G183299
TU248325 lncRNA upstream 1205620 8694779 ~ 8742963 (-) True G183327
TU248323 lncRNA upstream 1213233 8702392 ~ 8742963 (-) False G183327
XM_022681761.1 mRNA downstream 21651 7419349 ~ 7458730 (-) True ncapd3
XM_022681762.1 mRNA downstream 63348 7380244 ~ 7417033 (-) True wdr19
XM_022681768.1 mRNA downstream 112147 7309521 ~ 7368234 (-) False LOC103041735
XM_022681767.1 mRNA downstream 112147 7309521 ~ 7368234 (-) True LOC103041735
XM_022681765.1 mRNA downstream 177189 7214526 ~ 7303192 (-) True LOC103028119
XM_022682144.1 mRNA upstream 916 7490075 ~ 7502429 (-) True LOC111195271
XM_022681785.1 mRNA upstream 1524718 9013877 ~ 9062826 (-) False spock3
XM_022681784.1 mRNA upstream 1524718 9013877 ~ 9062826 (-) True spock3
XM_022681788.1 mRNA upstream 2187438 9676597 ~ 9765958 (-) True prss12
XM_022681789.1 mRNA upstream 2279371 9768530 ~ 9791976 (-) True mettl14
TU248021 other downstream 1053873 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 1367289 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 2184665 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 2267230 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 3929968 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 1347 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2166154 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2356663 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 3817130 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 3913548 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile