RNA id: TU248325


Basic Information

Item Value
RNA id TU248325
length 2777
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G183327
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 8694779 ~ 8742963 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCTACAGTATTTATTCTTGGTCAGTCATTCAAACTCACAGCAGCTGAATGTTACTTTCAAAcagtatatatttctctctctctctctctctctctctctctttctgaaatcttaaacaAAATAGAACCCATATGTACACGtattcaaaaatacaaaaatgcgTGATACAGACTTCGCCAGGTGTCTTTTTAAAAGACATAGAAACATACACGGGGTACGAACAGAGGGGTTTGGGACACGTCCTAACATATCATACACttcatatatttctttttatatatttcataaacGTTTCGTATCGCGTGAATCAAAAGCCTGCGTACGAAACGATGAAGGGTAAAAGTTTAGCTACGTAAAATAAGAATCGCTATTATAATGCCGCAAACGTTAGAAACTCTCATTTTTACATCCGTTTTCTTTCATTTGTGCAACAAGTTGCAGGTTGTGCCACAGCCGATACCACGTGATTGGCAAAGAGAGAGGAATGAAacagaaatgattcagtaataaaataataataacaataataatgtacaccattatttaaaattaaaataacattaaaaaaattaaaacaaataaaacaaatgctgGTGGCTGCGCCTGAAATATTGGAAACAGGGTGcgaatattaacaaaaaaaacaacagcagacaACAAATAACAGACAAAACTAAAATCATCTCAAAAACATCATGATCGTCGACTGAATACTGATATTAACACTGAATTATGTCGTTTTTTTGAGGTCTAGTACAGGcagctctttttatttatttattaaaaaaattaaacacgtCTGAAGAGCAGTAATACaaactctcaacacacacatttacacacacacataaaatctGATtcaagtattattatttttttttacatgcatcaAACCCACAAGGCCCCGTTCACACCTGGAAACACCACGCTGTCCACCGTCCAAGTGGGTTAGCTGAGCAGCGCTAATAAgcgctacattcacacagcaggagGATAAAGTGGCTGAAATCTGAGGTTCATTTCAGGCCGTTCACACTGAAACCGTTTTCAATCTGGTCTATTATCCTAAAAAGCAGCGCTTCACCTGAAGCTTTAGTTTCGGTTTCTGTTGTCCTATTACGGACGATGACATGAAACTATACAAAAAATTTAGTTTAGATAAAGCAAAATTCAGTCTGtttttgctgttcacactgCCAGACAGATAACACATCTGTACAGTACAGCtctggtggaaaaaaaaataagaaaccatttaaaaatgatgttttccttgattttaccaaattaaaaacctctggaatataataatcaatgaacttcttgaattttttgcaccaggagtcaaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaactgtaattaaaaaccagcgttattccaacaaatttagatttttttgtacttgtaaaacttaaaaatataaagagagaaactaattcagtgAAACATATCTCAGTTTCGTTgcaatattttccagagctgtatatggccACGCCCACTTCTAAAGTGGTGCAAATCCTTTTTTAATATGATCTATATCCAAGGTTTACCTGAAGAGTTCATTTTTCTAAACTGATGCTCTCTAAAGAGCTAAAGAGCAgagcttcacgtgaagtttcggtttcatcttttACAGCTGAACTCATCACAGAGAATGTATGTTAGAGAGAGGGTACGTTATTCGGCCACTCCCACTTCTTTGGtttctttaactttttaaaatctatttttgttttgctttggtACGGCAGCAGCACccctattgttttatattatataaaatctatTATATAATATGCACTTCTCTTACTTACTGCTGTTATACATTTTCACCCATCCTCATGCCTATTTACACTCTTTCTTCTTTGtgacaaaaatgattaaaaaattaattcacgtgatttatttatttacttatttcctATTTCATTACCACCTGTCaacgctgtccaatgaaaaacaagcttctacataaaaacagcaacttaaactttcaatgaaagtttttcaggtcattttgatttttttcctattggttcgttcacaaaaaaaaaaattgatacagTGTTCGGGAATTTGTCTGGTCAAATTATGTCgtaaactaaaaatggacaatttttagtttacgaTTGGATAGCTATTGGATAGCGACgatataaaagtgtaaaaaaataagagaccactttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagcggATCATCAAAccaaggcataaagttatccaaaagcagtgtgtaagactggtggaggaggagaatatgatgccaatctgcatgaaaactataattaaaaaccagcagggttattccaccaaatattgatttctaaacttttcttttttttttttttttgttatttcagttttttatcgttttctgcaaataaaagctctaaacgataatatttctatttggaatttggaagaaatgttgttcgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatgagagaaactgattcagaaactgaagtgctctcttcatttttttcagagctgagaCCCTCCCTGTGATTAACCAGGTGTGAATggggccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248256 lncRNA downstream 1173872 7519146 ~ 7520907 (-) True G183299
TU248269 lncRNA downstream 1177288 7516753 ~ 7517491 (-) True G183311
TU248267 lncRNA downstream 1188423 7504261 ~ 7506356 (-) True G183309
TU248264 lncRNA downstream 1205620 7480381 ~ 7489159 (-) True G183306
TU248202 lncRNA downstream 1479549 7165393 ~ 7215230 (-) False LOC103028119
TU248350 lncRNA upstream 50329 8793292 ~ 8811814 (-) False G183349
TU248351 lncRNA upstream 50329 8793292 ~ 8799047 (-) True G183349
TU248356 lncRNA upstream 50329 8793292 ~ 8796146 (-) False G183349
TU248363 lncRNA upstream 53483 8796446 ~ 8811814 (-) False G183349
TU248373 lncRNA upstream 85229 8828192 ~ 8831123 (-) True G183354
XM_022682144.1 mRNA downstream 1192350 7490075 ~ 7502429 (-) True LOC111195271
XM_022682143.1 mRNA downstream 1210021 7481599 ~ 7484758 (-) True LOC111195270
XM_022681761.1 mRNA downstream 1236049 7419349 ~ 7458730 (-) True ncapd3
XM_022681762.1 mRNA downstream 1277746 7380244 ~ 7417033 (-) True wdr19
XM_022681767.1 mRNA downstream 1326545 7309521 ~ 7368234 (-) True LOC103041735
XM_022681785.1 mRNA upstream 270914 9013877 ~ 9062826 (-) False spock3
XM_022681784.1 mRNA upstream 270914 9013877 ~ 9062826 (-) True spock3
XM_022681788.1 mRNA upstream 933634 9676597 ~ 9765958 (-) True prss12
XM_022681789.1 mRNA upstream 1025567 9768530 ~ 9791976 (-) True mettl14
XM_022681796.1 mRNA upstream 1162639 9905602 ~ 9953226 (-) True LOC103026071
TU248263 other downstream 1192707 7490506 ~ 7502072 (-) False LOC111195271
TU248021 other downstream 2268271 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 2581687 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 3399063 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 3481628 5180523 ~ 5213151 (-) False G182810
TU248668 other upstream 912350 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 1102859 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 2563326 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 2659744 11402707 ~ 11411642 (-) True gtf2a1l
TU249404 other upstream 3452249 12195212 ~ 12196658 (-) True G184051

Expression Profile