RNA id: TU249167


Basic Information

Item Value
RNA id TU249167
length 533
RNA type TUCP
GC content 0.50
exon number 1
gene id G183880
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11306289 ~ 11306821 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actcaaccctccacctcctcctcaggctacctgccttacggctgaagctcttgcctcattctttactgggaaagtggcagctatcagcagacagtttactgatgcgacatgtagcagtcctacatcatgctctgctgcccggtatccctctaccgaaggcgtcgctttctcctcgttcgctcctctcactgagaacgagacactggctctcctaatgcgtagccgtcctactacgtgtccacttgacccgattccttcagaccttctgcaaaccattgcacctgcaatcattccggctattactcacacgatcaatgcctctttaacatctggtgtgttcccgactgcttttaaacaagcacaggtcacaccactgcttaaaaagccttctctcaaccccgcccaggttgataactacagaccggtctcactactgccttttctttctaaaacattagaaagagcagctctcaatcaagtctctggcttcctcacccaaaatgacctcctggaccagaaccaatctggtttcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249140 lncRNA downstream 118747 10955599 ~ 11187542 (-) False G183857
TU249141 lncRNA downstream 118747 11160598 ~ 11187542 (-) True G183857
XR_002651526.1 lncRNA downstream 129105 11157282 ~ 11177184 (-) True LOC111195215
TU249139 lncRNA downstream 350306 10955599 ~ 10955983 (-) False G183857
TU249136 lncRNA downstream 461690 10844201 ~ 10844599 (-) True G183854
TU249171 lncRNA upstream 40089 11346910 ~ 11347163 (-) True G183884
TU249285 lncRNA upstream 161036 11467857 ~ 11468253 (-) True G183960
TU249288 lncRNA upstream 169815 11476636 ~ 11479389 (-) True G183963
XR_002651533.1 lncRNA upstream 1221753 12528574 ~ 12633591 (-) True LOC111195221
TU249451 lncRNA upstream 1375674 12682495 ~ 12682697 (-) True G184094
XM_022681813.1 mRNA downstream 798894 10498845 ~ 10507395 (-) False mogs
XM_022681817.1 mRNA downstream 798906 10498845 ~ 10507383 (-) False mogs
XM_022681816.1 mRNA downstream 798974 10498845 ~ 10507315 (-) False mogs
XM_022681814.1 mRNA downstream 798974 10498845 ~ 10507315 (-) False mogs
XM_022681815.1 mRNA downstream 800099 10498845 ~ 10506190 (-) True mogs
XM_022681855.1 mRNA upstream 96191 11403012 ~ 11411644 (-) False gtf2a1l
XM_022681856.1 mRNA upstream 96738 11403559 ~ 11411642 (-) False gtf2a1l
XM_022681854.1 mRNA upstream 105789 11412610 ~ 11426503 (-) True ston1
XM_007230114.3 mRNA upstream 122428 11429249 ~ 11431897 (-) True rps27a
XM_022681866.1 mRNA upstream 204359 11511180 ~ 11574143 (-) False ccdc88a
TU248707 other downstream 1453908 9845822 ~ 9852381 (-) False G183585
TU248668 other downstream 1648675 9655313 ~ 9657614 (-) True G183559
TU248263 other downstream 3804217 7490506 ~ 7502072 (-) False LOC111195271
TU248021 other downstream 4879781 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 5193197 6111370 ~ 6113092 (-) True G183043
XR_002651529.1 other upstream 95886 11402707 ~ 11411642 (-) True gtf2a1l
TU249404 other upstream 888391 12195212 ~ 12196658 (-) True G184051
TU249635 other upstream 1935202 13242023 ~ 13281803 (-) False LOC111195225
TU249668 other upstream 2244449 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other upstream 2244449 13551270 ~ 13594753 (-) False LOC111195226

Expression Profile