RNA id: XR_002651539.1


Basic Information

Item Value
RNA id XR_002651539.1
length 1349
lncRNA type inter_gene
GC content 0.46
exon number 6
gene id LOC111195225
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13226333 ~ 13303680 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACTCACCTGGATGTCATCAAGAtgtacttttcacacctttcaaTTGGACTGTTTACACTGGAAAGAACTACTTCCCCACAGATTGACTGAAGGAGGTGTCAACTGGAGGATTGCATCCTACTTTTCCGGGATACAGAACAGCACCAGACCTTCCCCCAGCCCTGGCTCAGAGCTCCCGGTCTAGACATCAAAAAAGGCAGGAACAGAAATGTGTGGCAGCTGAAGGAACACACGGTCTGACAGGGTGGTGGTTGGTCTGGAGCCTCTCTGGAATCATTGTATGCAAAGCAGAAAATTAATGGAGCCCAACATGCCTCTATACTTTGCTGAGTGACCCTGGTTGTACGAAGATGTCCCGCTGCAGTTCTACTTGTGAAGCCACAGCAAATTTGgGTCGTCCTCCCTACCTGTGAGCTGCTGGAGTACCGACCAGGTGCGCGAGAAGCAGAGCTTTTGCTGGAGCCCATAGAGGAGTCAACACTCTTTCCACTGTAGCAGACGCAGTGGAAGATGAAGATGAACATTCCCTGTAGAGAATTAAAGATGGTGAAGAGATAGGCCATGATCACTGTGCTCTCGTTCACGTACATCAGGCCAAACGCCCAGAAGCTGTCACCCTGTACCAGAGATGCCATAGATTCTTCAGAAGCCTCAGATGAGATACTGGTGAACAGATGGAGCCtcacaaacagacagagagtaaaaagaggagaacatgaaagtgtaaaggagaagaagaggaaaaaaagaggtgAAGATATGAAAGTGCAGCAGAGGTGCAGGGTGGCTGTAATCAGTGTGGAAACTCTCCAGCAGAGAGCTGTAGAGCCTCAGGGCCTCAGATTTCACTGCCCTGATTATAAAcctgtgttaatttaacactcctgctttactaacacacacacgctgtCTCGTAGACCAGGATTAACCCCTTCGATTTCTAGCAGGTATATTTCCATAGACATCTGCCCTACCTTTTCTAAATGCACATTTAGTACACCATTCAAACAGAACAATgttcgtccacatactgctgccttCTCAAGAGCTGAAGGCACTGGTGCTATGCAGTGGTTAGCTGCAGCGCCAGACCAATCCCTAATTTAAAATGCTATTGGACAAAATATCAGCACTCCACACCTACCACAGAATACAAGCTGCATGGGAAAGATTATTGCAAGACAACATTAGGATCCTCTACAACAACATGCTGAGATGAGATAACACACAACGTCTCAAaatgtagctcaataaataagACCAAAACTTGCACATGCCAATTTATATTCGTACAATTTCTGGTACTATTTATCTTCCTTGTGAACACCATTAAAATTCAACACTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249639 lncRNA downstream 9990 13226333 ~ 13232044 (-) False LOC111195225
XR_002651535.1 lncRNA downstream 429594 12806281 ~ 12812440 (-) False LOC111195223
TU249521 lncRNA downstream 429594 12806315 ~ 12812440 (-) False LOC111195223
TU249527 lncRNA downstream 429594 12806315 ~ 12812440 (-) True LOC111195223
TU249529 lncRNA downstream 429594 12806315 ~ 12812440 (-) False LOC111195223
TU249664 lncRNA upstream 213999 13517679 ~ 13576322 (-) True G184244
XR_002651541.1 lncRNA upstream 247452 13551132 ~ 13594728 (-) True LOC111195226
TU249677 lncRNA upstream 250008 13553688 ~ 13559115 (-) True G184250
XR_002651540.1 lncRNA upstream 260739 13564419 ~ 13594669 (-) False LOC111195226
XR_002651496.1 lncRNA upstream 299596 13603276 ~ 13605583 (-) False LOC111195158
XM_022681925.1 mRNA downstream 363014 12824181 ~ 12879020 (-) False mpdz
XM_007230156.3 mRNA upstream 495841 13799521 ~ 13807329 (-) False LOC103027614
XM_007230155.3 mRNA upstream 495841 13799521 ~ 13807326 (-) True LOC103027614
XM_007230158.2 mRNA upstream 509718 13813398 ~ 13827899 (-) True LOC103028152
XM_022681933.1 mRNA upstream 685212 13988892 ~ 14040245 (-) True LOC103031091
XM_007230171.3 mRNA upstream 747050 14050730 ~ 14058635 (-) True drap1
TU249404 other downstream 1045376 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 1830392 11402707 ~ 11411642 (-) True gtf2a1l
TU249167 other downstream 1935213 11306289 ~ 11306821 (-) True G183880
TU248707 other downstream 3389653 9845822 ~ 9852381 (-) False G183585
TU248668 other downstream 3584420 9655313 ~ 9657614 (-) True G183559
TU249668 other upstream 247590 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other upstream 247590 13551270 ~ 13594753 (-) False LOC111195226
TU249876 other upstream 759977 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 786026 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 787829 14091509 ~ 14091590 (-) True trnas-gcu_6

Expression Profile