RNA id: TU249671


Basic Information

Item Value
RNA id TU249671
length 1849
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC111195226
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13551132 ~ 13594753 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCGCTCTCTGAAAACGggtgggaaaaaaacacaggaacacctggtttaattatttaattatcagAGTGTGGGATAATGGCAGGGTTCTCTGTTTGTGAGGAAGACCGAGCCGCAGAACCTGAGATTAAAGGAGTCTGTAAAACCCGCCTCGACATTCTCACTGGACCGGGAGCGAAGGAAGAAGGAATTTTGTTTGGAGTCTGTTCAACCAACCGTCAGCCGATCAGCCTTTCTACATATGCTGCCACTGCCCCAGAGACGTGTGGGTGGATGCCACAAGaGCTGTTGGTGACATCGCAATTGGATGGAGGCAAAGCAGGCCAGAGGTCAGAGGAGGCCGATGGGGCAGAACAGCAGTCAGTCCATTCCTCCTGAGAGAACTCCACACCAGTAGTGCTTCCATctaaaccaccaccaccagacCCCTCAAAGTGAAAAGTCAAGAAAACAAAGCTATCAGccgTCCTACTATCAATGATGATGATCTTCTGAACCCAGGAGAAAGCATAGACGGCTTATGAATGGTAAGGATGCAAGCTGCACAAGCCATGAAAATGTAAGATGTCCTTATGAACATAAAACATGGCGACATAATAGAGGACACCCAAAGTTCCGGTCTTTTCCCAGACTGCGCCTCCAGCGCATTGTGAAAGTGACCTGTCGCAGTCGTGCACTGAGGAGAATCAACCACGGGATGCTCTCCATCACCATCCAGTCATACCCGGGCTGCAGAGGACCGCCCGGCAGGCAAGCACGGTATGGTCAGCTACAACTAGGTCACTTCTCTGCAGGGGGGAGAGTGCTAAGTCCGACTGAAGGAAAAGCCACTGAGCATATGGGGTATCTGCTACTATGCTCTAATCCATCTGGATAGACTGTCTATGTCTCTGGCTTGCCCGTTCTCTCTGTGGAGGTTCACATTTTTTAGACtttatagtttatagagtaaGTGTGAGTAAATAGCTTGTGAAATGCAGGGAAAGTCTCTGTCTATAAGAAAGAacttaaaggtttttttttttttttttttaacattttgcgatTGCTTGTTAAACAGCCCATAATTATGGAAATTTATCATGGAAACAATTTGCATTAACCCTTATGCTGTAAGTCAAACTGACCCATTTTaagtatgaaatatatatattttttatttgctcaaCATTTTCTGTAGGGCTTAATCAGTGTATATATTGTAAGGGGAAATTTTCGATTCCTAAATGCATTTTGCTTAACAGGTGCATTTTGACCTCATAGTAAGCTTGTAAAATTCCATGTTATAAAGTTTGCATAAGGTTTGATCTCACGTTTCCCTCATGTTGTCCCAAATTTGTCTGTAGTGAATGTGTTTCTGTTGCTGTTTATTGATGCTGATTTATGTCCGGTTAGCACAAATGCTAATCCAGCAAGCTATCTAGAGAGACAGGCACtttattttcctccaaactaTCGGAACAGCATCGCTGTACTGAAGagcctcactcactctcacagtctctctcacatgcatgcacacagcTGATGACATCTCCTCTTTCTAAGGTAGGTTAGAAAATGCTGCTACACTTTATTTAGtttcctccattaaagctcCCAGTTAAAATCAGTTAGTTAGCAcattataatattacaatattctaaTTCTTACACAggtcagccacaacattaaaaccagctctGTATATCCATTTCACTGGTCAGTCAACTTTACAATTACCTTGTTTCTGCGATCCTTGTAGCtgattttaatggttttaaatgtttttttcagtacaTAGAAATAGTTTTGTTCCTTACATTTCgaggtaaaatgtaaaaagtaagtATAACACTGATATTTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651539.1 lncRNA downstream 247590 13242034 ~ 13303680 (-) True LOC111195225
TU249643 lncRNA downstream 253155 13297735 ~ 13298115 (-) True G184224
XR_002651538.1 lncRNA downstream 269449 13242034 ~ 13281821 (-) False LOC111195225
XR_002651537.1 lncRNA downstream 269449 13242034 ~ 13281821 (-) False LOC111195225
TU249639 lncRNA downstream 319226 13226333 ~ 13232044 (-) False LOC111195225
XR_002651496.1 lncRNA upstream 8523 13603276 ~ 13605583 (-) False LOC111195158
XR_002651495.1 lncRNA upstream 9280 13604033 ~ 13605583 (-) True LOC111195158
XR_002651493.1 lncRNA upstream 20930 13615683 ~ 13618625 (-) True LOC111195153
TU249683 lncRNA upstream 24879 13619632 ~ 13619836 (-) True G184256
TU249782 lncRNA upstream 81584 13676337 ~ 13677778 (-) True G184330
XM_022681925.1 mRNA downstream 672250 12824181 ~ 12879020 (-) False mpdz
XM_007230156.3 mRNA upstream 204768 13799521 ~ 13807329 (-) False LOC103027614
XM_007230155.3 mRNA upstream 204768 13799521 ~ 13807326 (-) True LOC103027614
XM_007230158.2 mRNA upstream 218645 13813398 ~ 13827899 (-) True LOC103028152
XM_022681933.1 mRNA upstream 394139 13988892 ~ 14040245 (-) True LOC103031091
XM_007230171.3 mRNA upstream 455977 14050730 ~ 14058635 (-) True drap1
TU249635 other downstream 269467 13242023 ~ 13281803 (-) False LOC111195225
TU249404 other downstream 1354612 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 2139628 11402707 ~ 11411642 (-) True gtf2a1l
TU249167 other downstream 2244449 11306289 ~ 11306821 (-) True G183880
TU248707 other downstream 3698889 9845822 ~ 9852381 (-) False G183585
TU249876 other upstream 468904 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 494953 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 496756 14091509 ~ 14091590 (-) True trnas-gcu_6
TU250431 other upstream 1782614 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1782955 15377708 ~ 15381208 (-) False smim18

Expression Profile