RNA id: TU249782


Basic Information

Item Value
RNA id TU249782
length 743
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G184330
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13676337 ~ 13677778 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tTTCATTATTAATGTTGGAGGGAAACAGAAGGAAAGGTTGAGGAAAAGTCTTTGAAGCAGGAAAAAGGAGAACAGGTTGGGTCTTTCACTCTTTAACTCTCTGCTTGACTAAAGGAAGGAAGATGTCCAGTTTATCCGGAAGCTTGTGGCTGATCTCTTACCTTCTTCTGTGGCTTCCTTATTACTGATGCTGGTTTCTGGCTGTTCTGAAGTTTCTGGCTGGATCAAGCTGCATCTATTTTCTGGAGGCGTGGCCTTGGGCAGCATGCAGCCACCCTGTCCTTTCCTACATTGCAGGCAGTTCTCATAGATTGATGAGTGAGAGGCACGGTGGGAAGGAGTGGTGTGACTGATGGTGGATGCAGGAGATGTGGGTGATGCcagagctaatgctaacattcGCTCATATTGGCTGGTTCTGACTGATCTCTGGTTATCATTCCCCGGGGGACAATAATGCCCCGGCTGATGAGATAACAGAAGGCTTGGTTTGACTGACACCGTGTCAGATTTTCCTGGGCTATAGTGCACCAGAAGGTCATTCAGGCTGTCCATATAACTCTCAGGGCTTCTCTCCTGCAGTGTTTGATTAGTCTCTGAACTTCCACATGGCAGGTCCTGCATGCTGGAAGGTGCAGAAGACTCTGTTTCATGCTGTTTAGTGGGACTCTCCATGGCATCTGTGTTGATACTGGCTGATTTTTTTACCTGGCACGCCTGGTTGTAGTGTAGATCCTGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249683 lncRNA downstream 56501 13619632 ~ 13619836 (-) True G184256
XR_002651493.1 lncRNA downstream 57712 13615683 ~ 13618625 (-) True LOC111195153
XR_002651496.1 lncRNA downstream 70754 13603276 ~ 13605583 (-) False LOC111195158
XR_002651495.1 lncRNA downstream 70754 13604033 ~ 13605583 (-) True LOC111195158
XR_002651540.1 lncRNA downstream 81668 13564419 ~ 13594669 (-) False LOC111195226
TU249794 lncRNA upstream 46980 13724758 ~ 13729943 (-) True G184338
TU249814 lncRNA upstream 157003 13834781 ~ 13836418 (-) True G184354
TU249860 lncRNA upstream 250328 13928106 ~ 13928313 (-) True G184396
TU249871 lncRNA upstream 311031 13988809 ~ 13990887 (-) False LOC103031091
TU249891 lncRNA upstream 450750 14128528 ~ 14131095 (-) True G184422
XM_022681925.1 mRNA downstream 797317 12824181 ~ 12879020 (-) False mpdz
XM_007230156.3 mRNA upstream 121743 13799521 ~ 13807329 (-) False LOC103027614
XM_007230155.3 mRNA upstream 121743 13799521 ~ 13807326 (-) True LOC103027614
XM_007230158.2 mRNA upstream 135620 13813398 ~ 13827899 (-) True LOC103028152
XM_022681933.1 mRNA upstream 311114 13988892 ~ 14040245 (-) True LOC103031091
XM_007230171.3 mRNA upstream 372952 14050730 ~ 14058635 (-) True drap1
TU249668 other downstream 81584 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 81584 13551270 ~ 13594753 (-) False LOC111195226
TU249635 other downstream 394534 13242023 ~ 13281803 (-) False LOC111195225
TU249404 other downstream 1479679 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 2264695 11402707 ~ 11411642 (-) True gtf2a1l
TU249876 other upstream 385879 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 411928 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 413731 14091509 ~ 14091590 (-) True trnas-gcu_6
TU250431 other upstream 1699589 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1699930 15377708 ~ 15381208 (-) False smim18

Expression Profile