RNA id: XM_007230172.3


Basic Information

Item Value
RNA id XM_007230172.3
length 7081
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC103032041
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 14063644 ~ 14116456 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtgtgtgttttttagtgtagtgtgtgtgtgtgtggggcggTGGAGCTGAAGGAAGCGAAAACCCTGCGCACGGACATTTACTTTTCCCCGAGAAAGGCAGGATCCGGAGCGGCCGTACTCGGTGTGCTCGCCCTGCGGGAGTGTATCGGTGCGGGGAGCGGGGATGGACGGAATATTTGGCTGGCCTCAGCCCCCAGTGCCGCAAGGCAACCCCTTCATAGAGATAATCGAGCAGCCCAAGGCCAGGGGGATGCGTTTCCGTTATAAATGTGAGGGAAGGTCAGCAGGCAGTATTCCAGGAGAGAAAAGCAATGACTCCACCAAAACACATCCTGCCATTAAGGTGAATAACTACAGCGGCCCTTTACGAGTGAGGATCTCTCTGGTTACCAAAAGCCAACCCTACAAGCCCCACCCCCACGAGCTGGTGGGTAAAGATTGTAAACATGGATACTACGAGGCTGACCTTCCGGAGAGACGAGTTCACAGtttcCAGAATCTGGGTATTCAGTGCGTGAAGAAGAAGGATGTGACTGACGCTGTTTCCTGCCGTCTGCAGACACAGAACAACCCTTATAAtaTTCCTGAAGCGAAAGTGTGGGAAGAGGAGTACGACCTGAATGCTGTGCGCCTCTGTTTCCAGGCAACCATCACCCTAGCCAACGGAGAGCTGTACACTCTGGAGCCCGTCGTCTCCCAGCCCATCTACGACAACAGAGCTCCAAACACAGCTGAGCTGAAGATCTGTCGGGTAAACAAAAACTCTGGAAGCTGCAATGGAGGAGATGAAATCTTTCTACTGTGTGACAAAGTGcagaaagAGGACATTGAGGTGCGTTTTTTCCGGGACGCATGGGAGAGTAAGGGCTCGTTCTCTCAGGCTGACGTCCACAGGCAGGTGGCCATCGTGTTCCGCACTCCGCCCTACTGCGATACAAACATAACTGAGCCTATTCAAGTAAAGATGCAGCTCCGCAGGCCCTCAGACAGAGAGGTCAGCGAGCCAATGGACTTCCAGTACCTGCCCCCTGACCCAGATGAGTACAGGCTGTTGGAGAAACGGAAACGGACACAGGGAATGCTGCAGAACCTTAAACTGGGATCTATGCAATCAGgtccTTTGCCAGAGAGAAGGCCATTCAGTACTGCAAGAAGAACATGTACAGCCACTAagcctcctcctgctgctgcaaGTGTTCCACCCGTGGTTAATCCAGTGGCCGTGCAGTCTACAGTTAAGCCTCGGCCCTTTTTCAACTCTCCTCCTCCAGGACAGTTGTTTACTCAGCCTAAAATGGAATCATCTCTGACACCCTCTACTGGAGACACCTGGAAGTTCCTCAACAGTCTAACTGTGCAGCAGAGTTCCTCCACtgcccctccaccagtctcccAAGACTTCCACACTGTAAATCTCTCCGACCTCCATGACTTCTCCTTCAACGCTTTCTCCCAGTCAGCTCCAGACCAAGCCAACACGGCTTCCGGACGAGATGGACCTGGAAGCAATGTGGTTGGAACTACAGTGGCTCAAGAAATCCAAAGTAACTACCCTGCTCAGAGCAGTTCAGCGTTCCAGACAGAACACCAAATGGACGAAAGTGAGCTCCCAGAATTCCCAAGCTTTTCCGAACACCAGGTGTCAGGGATGGACAACATCAACACTGACGATTTCCAAGCACTGCTGGGTCAGAGCGTCATGACTACAGAATCAGCATCTGGAATCCGGAATTGCGCCGCTTCTCTCAGCACagttgctgctccagccttggatGCTGCAGCTAGCATTGGTTCAAATCAAGTGGGGAACAACACAGGGAACAATGCAACGACATGGATGTCTTTTCCACCAGCCATTATGAGCCTGCTGCAGAATGAGCAGATGGTGGATGCCACCCAGGCTGGTCCTCCTGGAGGCGTAGGCTTCGATGACACCGATACGATGGACTCCATTGACGATGACCGCCTGATGTCCATTTTTGCCAGCGATGCCAATGTTGGCTTTCTGTGACATTTACATATAGTCACATCTGACTGTTTGACCCGCACCATCCTTATATCGAAACTAACTTCAAGAAGGGCATAATTCGACAAAGGACAGAGCAAAACTCCAAGAAGGGAAAAAGGAaacttttgattttcttttctttttttaaaatggtttatatACATGCTTGTGCCTCAACACAGTGACTGACTAATACAGAAAGCCACAGAGTGCCTCTAGAGGGTCTGGTGTATCAGGATGATGAAGCAGAAGATGAAGATAAAGCTCCCTATTTGCCCGTTGCCAcctctgttttactgtttactttattatttccaTCTGTTTCCAGAAATGGAAAACAGCTGTCTGTTGGGAATTTATGTTTTTCGAAGTTTCTTAATTTGTGCCACAAGCTGATAAAGTAATAAGACTGATTATACTGCAGTACTGTTCCGGTGGCTTTTAAAAGCAATAATGCATTTCTACAAGGAGTCTGAGATAACAGTGTGTCTTTAAGCTGGAAAAATGACTGTTTAACAAAGGGATGCACCTGTATGAGAGTTGTAGGCCCATTACAATATCtacaacttttttacatttctcttGATGCAGATACATAGACATTAGGTGTAGATTCCAAAAATCAGAATTAGTATGGATGAGTTCGGGTTATGCACCCATTAGCATCCATACATTTGCCGCTAAGGCTGGGCTATATAGTGAAATGATGATAAAGATACAAGCTAATGTGTTAGCCACAAGCTTCCATACATGTCACATTATTATACAATGGGTTGGGTTGTATTTTTACAACAATATAGAAATTCTGACCTGGATCAGCATTACAGagaaattacattttcagaaaattagataCAATGCAAATACATGTATTCCAGTATCAGTTTAACGTTTAGGTCAGTTCTACATCTCTAAGAtgtcatttaaattaataagCAAATATCAACTGtcatgatatgatatgattctGATATTGTGCATTCCTACAGTTTACCCAccaatcatttattttcatgattaggtgaaaattattttttggtgGGACTAGTTTTGGATGGTCTTAGCTGGTCTTTGATTGACAAGGTGGTTGAAAACCACTAGTCATCAACATATACTGGTTATCTAACTGGATAAAAATCTCTCTCTAGCTTAGCATAGTGTATGTTCTGTTTGATTTTGGTTGaccttggtcatgctggtcatgctggttgtctagcttggtcaggttgatcCAAGGTtgcttgtagaccagctaaaccatctaACTGGCATAAGAATATACCTTATGCTGGTGAAGAGCTAAGCTGGCCAACCAGCATGAGCAGCTTGAGCTCGCCGTTCTGTTTTTCAGCAGGGTTGGTGCAAATAGCAAGTGATACTGATTGTGATTTTGTCAGTATAATTTAAGGTTCACCAAGATGAACTTAACAATTAAACCTTAATAAAAAGTATGGGAAGGGGATAACTACCTAACAATAGTAGGTATGGAGTGTGTCCTgtaactgtatttaagtacacaGTGCCTTTGAGAAGGCATGAGAAAGCTTTCAATACAAAGTGCATGAAAACAAAATAGCATCAGACACTGTTGGTAAATCTGCAGAATAGGTTATTTCATCGTTATAACTGTAATTTTGGCAGTTTTATTAGGAAGTTAAGTAACAGTACCAAATAccagtaaaatatttaatgtactggttttgaaatattaaaatacaggctaacaatacagtgaaatttacAATACACtgatattttataaaatcaaCTGTAGAAGTAATATATTTACTCACAATTGAGAGTATAAAAGTTAGACCTTGCAACTACGAGACACAAGTGCCTTAATATGAGCATATGCCACAAATATCATTCTAGCAGCGGCCCAACAAAatatcagtgtgtttttttttttttaatggtggcAACTTTTTGACTAAGTTCCATTACcatcagatcggatttggctatcctgacggttcacattcacaaatgtaggtgacctgtatctgtgtgtaatatgaacaaatctgtcccagAAACAAATCACATGCTCACATTGATACAAGTATAAACGCCGCAACAAAAACGTCATATTTAAGAGACgacttgtagctttataaagagaaattgatgctcatatgtggagcatcttttgctggagtggagacaGCTAAACTAAAGTACAGGCTCAGGACGAggctgtttgcttttgctgtttttgtagctatagctgcaccaagagatgttaTGGATACGAGAGAGAATCACGTAGCGCATGCTTAAAAGCAataagacgcatgaattctgatttgactgcTCACAAtcatttaggaccacatatggtGGAAATTCAAATctgattgaaaaagaaaaaaaaaacagatttggcacgttcaaacagccatgaaaaaatcagatctgagccacattgagtaAAAAGAGTCACTTCAGTCTGGCAATGTGAACTTAGCCTTTTTCTTTTTGGCCAGGCAATAAATATTTCCTTGACAAACTtgacaaggaaaaaaaaatgttcagctTCCAGTGCTACACACTCACTCTTTGCTCCCGTTGAAGGCGGTCGCATTTTCTCCCTCTCCTCCCCTTATCTTTCCTGCTTGGCTTCTCCTGTCTTGTCTATTCTGCTGTATACTCTAAGAGACTCTCTTAGCACTGCTCTTCAAACTAGAAAGTATGGATTTGATCAGATGGTCTTTCAATAAAAGCGACACTATCTTCTTGACGAGAAATCTGGGTTCAGGGGCACCTGTCTGTCCTAACGGAACGTTTGCAGCCGGCTATGTGAAGGATTTGTGGGAGAAATGGCGTGTCTCTCCACTCTGTCACAATGATTTTGCTGATTGGATTAGGCATTGTCCTGATATATATCGTGAAGTTAAAGgagtggggacagctgcctgaCATGATTGATGCAGGGGTTAGAGCTGTCAGTACTCAGACTGTGACTATAAACCGCAACATGGATAATATCTTGGAGAAGCTCACGGCtttgcaaagaagagtggataAAATCAAGAACCATGCTGGACAAAGTGTGATCATGCTAAACTGGTCTGCGACCACTCTCGCCCAAACAACAAGTCCAATCTACTTTCGGCTCATCCTTATCAGTACTCGGCCTTGGCCAAGGCGAGCTGCTGATAGCAAAAACTCCTCCCGAAGatcatttattatttctattactaGAAACTCTCCCCTGTTTCCTTTAGACATTGCTGGATGTTGACTCTGACTGGGAGTGGATCAATTTGCTGTGTTATCACTATCCCACCCTGTGGACTGAGGCACACAGACAGAGCCTCATTGTTACCAGGCATAGTGACTTTTCGCCCCCCTTCCCTGTTTCCAGTCCTGTCTTCATGTGTAATGTTGTGTTTTGTGGCTATGTGCTGAGTTTTTCTTTCTGCTCCCACACTGTACTCTCTCAGGAGAACAGTCTGTGGGTTTGATTTTCCCCCCTTCTCCCCATGTATCCTACTTTTTAATTTCCTCATCCCTGTCTTCCTGTCCTGTCTCCCCTTTGTATGTTACTGTACGGATGGGTTGATGGCAATTTTTGTTCTACCAATGCAATAAAGTACTTCTTATATTGGTTAGCTGAGTTAGCTCATTAGCTCCTGCGAAGTGATAGCCTCTTCGGTCTCtagtgtgtttatgtattttagcTTTGCCATCTGCTAAACATTCTACagtaattttactattttataaagTATACACATTGTCTACACGCAATGTtgtagaagaaccactttttgaCCCTTTGTTCGATTAAAAAATTTATTGTATCAGTTCAAAGCTTTTTCACAAtctagaaaaatgtttttttgagaaCATGAGCGGGATTACGGACTATTCTGATTACAGGCTGACTGTAGTTACAGTAGTCTTATGTTTAAACAGTAAGAATCATGACCAGTTTTTCTGTAAAAATTTAGATTGAGTAtttttagtattgttgttgctgttaattattattataaaatgttattagaATGACAGTCAAATCAAGGCCTCACAATATGTTGTCGTGCAGCTCTTCTCCGTgggttaataataatatatatatatattttttttcatcaaaagCTTTCAGTAATTCATCCTCACTTGgatgttcgtttttttttttataatttatgacattcttttttctgtttgttgtgtttgggtAAGCTATTTACTTATACAACATGTCTCTGTTGAAGATTTACTTGGGGCCTATTgataaaatgagtttcttttcaCTTCTACTGATTGGCCTTCTtgtagcattttattttagctgTAATCGAAAGGttttgcttgccttaattaattattttaataatgttatgaCCGCCAAATCAGTTTATTGGTACCAAAACTGCAAGGCACCTGTTGACACAAGGAAGGGTGGGGTTGAAAGGGGAGTGTGTACAAAAGAGAATTTATTACAgaatattacagtataatactgAGCAAATTACCTAATGTTCATTTATGTCATATATTCAGATATTCTATATGCAGATGGGCCTTCCTTGTAAATCCAGTGGGACTGAAGCTTTGTACATAAGACTTTGTACATAATTAAGATTAAATAAGattgtctgtttatttttaccaagagGTAAATATCAGAATGGATGTAAAATACAGTGGAAGAAGAAAGATATTGATTAATTTGattcaatttaattttctttttgttttctttcatttttttgaaTGAACAGTAATTTTACTTCTGTTATTCTACTTCCGTTTCAGTgagattatattattatgagGTTGGCATACAGTGAGTATATATTCATAGCATTGTACAACTACTAGTACTCCCGCACTCTTTGCTGAACTGTACATGTAACCTGACTGCTCTTATTGAAAACAGCATCTATATCATCTATATGCAACATGCCGTGTAAAAAGTGTATGTAGTTTTGATAAAGTTTCTGTAAGAGTGTTCTTATTTTTGAGTAGCAGGAACtgaaaacttttgttgaatttgGTCGAAATCTGTTTATCTAAATTGGCTTCTGACCTAcaataaatgtgtgtatattgtt

Function

GO: NA

KEGG:

id description
K04735 RELA; transcription factor p65

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249871 lncRNA downstream 72757 13988809 ~ 13990887 (-) False LOC103031091
TU249860 lncRNA downstream 135331 13928106 ~ 13928313 (-) True G184396
TU249814 lncRNA downstream 227226 13834781 ~ 13836418 (-) True G184354
TU249794 lncRNA downstream 333701 13724758 ~ 13729943 (-) True G184338
TU249782 lncRNA downstream 385866 13676337 ~ 13677778 (-) True G184330
TU249891 lncRNA upstream 40194 14128528 ~ 14131095 (-) True G184422
XR_002651527.1 lncRNA upstream 91771 14180105 ~ 14185344 (-) True LOC111195216
TU249916 lncRNA upstream 247612 14335946 ~ 14336641 (-) True G184447
XR_002651551.1 lncRNA upstream 865110 14953444 ~ 15001573 (-) False LOC111195232
XR_002651554.1 lncRNA upstream 865110 14953444 ~ 15001524 (-) False LOC111195232
XM_007230171.3 mRNA downstream 5009 14050730 ~ 14058635 (-) True drap1
XM_022681933.1 mRNA downstream 23399 13988892 ~ 14040245 (-) True LOC103031091
XM_007230158.2 mRNA downstream 235745 13813398 ~ 13827899 (-) True LOC103028152
XM_007230156.3 mRNA downstream 256315 13799521 ~ 13807329 (-) False LOC103027614
XM_007230155.3 mRNA downstream 256318 13799521 ~ 13807326 (-) True LOC103027614
XM_007230178.3 mRNA upstream 99342 14187676 ~ 14198597 (-) True lurap1l
XM_022681550.1 mRNA upstream 111889 14200223 ~ 14207686 (-) True LOC103033946
XM_015606302.2 mRNA upstream 250380 14338714 ~ 14340598 (-) True LOC103042598
XM_007230302.3 mRNA upstream 1171043 15259377 ~ 15261518 (-) True LOC103043225
XM_022681986.1 mRNA upstream 1176774 15265108 ~ 15303915 (-) False LOC103042179
TU249668 other downstream 468891 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 468891 13551270 ~ 13594753 (-) False LOC111195226
TU249635 other downstream 781841 13242023 ~ 13281803 (-) False LOC111195225
TU249404 other downstream 1866986 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 2652002 11402707 ~ 11411642 (-) True gtf2a1l
trnas-gcu_5 other upstream 1372 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 3175 14091509 ~ 14091590 (-) True trnas-gcu_6
TU250431 other upstream 1289033 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1289374 15377708 ~ 15381208 (-) False smim18
TU250482 other upstream 1577777 15666111 ~ 15671936 (-) True smim14

Expression Profile