RNA id: TU249916


Basic Information

Item Value
RNA id TU249916
length 696
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G184447
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 14335946 ~ 14336641 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgtcacgtcttagccctgtctcatgtctctgtgtgtcttccccacgtgacctgtgcctctctgtgtctcctgtcagtagatttccaccatgtgtttctcatttgtagctccgccccttccccaggtgtttccaattctagtgtgttttatgttactataaatagccctcctctgccaccttgtcctccgtcggtctttgcaccttcctctgttgtctgtctctccgcgtttctgtgttgctatagccctagttcagtgtttattcatagtttgtttcccttgctccctattctgtgtttttctgtttatttctagtttcctatttttttatccattgtTTCATTCGTCGCTCcctagttccctgcttagtgttttgcttcttgttgtttttgctgtgtaaatatattccctgtatatatccctgccttatttagtttagtacttATTCTGTTCCTCGttaattttcttatatatatattccttgtttatttttgttattattattatctcttgttgacttagtttatgttctctagtttcactgggttgttttggtttttggttattcgtttatctttgttaagtgtttacttgtttcttgtttcattgtttatttgttatttatttaataaattatttatatcgctcttacctgcacttgtgtccgcctcctcgtctaccTGCCTGGGTATCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651527.1 lncRNA downstream 150602 14180105 ~ 14185344 (-) True LOC111195216
TU249891 lncRNA downstream 204851 14128528 ~ 14131095 (-) True G184422
TU249871 lncRNA downstream 345059 13988809 ~ 13990887 (-) False LOC103031091
TU249860 lncRNA downstream 407633 13928106 ~ 13928313 (-) True G184396
TU249814 lncRNA downstream 499528 13834781 ~ 13836418 (-) True G184354
XR_002651551.1 lncRNA upstream 616803 14953444 ~ 15001573 (-) False LOC111195232
XR_002651554.1 lncRNA upstream 616803 14953444 ~ 15001524 (-) False LOC111195232
TU250075 lncRNA upstream 622279 14958920 ~ 15001461 (-) False LOC111195232
TU250076 lncRNA upstream 622279 14958920 ~ 15001461 (-) True LOC111195232
XR_002651550.1 lncRNA upstream 622571 14959212 ~ 15001559 (-) False LOC111195232
XM_022681550.1 mRNA downstream 128260 14200223 ~ 14207686 (-) True LOC103033946
XM_007230178.3 mRNA downstream 137349 14187676 ~ 14198597 (-) True lurap1l
XM_007230172.3 mRNA downstream 247612 14063644 ~ 14088334 (-) True LOC103032041
XM_007230171.3 mRNA downstream 277311 14050730 ~ 14058635 (-) True drap1
XM_022681933.1 mRNA downstream 295701 13988892 ~ 14040245 (-) True LOC103031091
XM_015606302.2 mRNA upstream 2073 14338714 ~ 14340598 (-) True LOC103042598
XM_007230302.3 mRNA upstream 922736 15259377 ~ 15261518 (-) True LOC103043225
XM_022681986.1 mRNA upstream 928467 15265108 ~ 15303915 (-) False LOC103042179
XM_015606580.2 mRNA upstream 928467 15265108 ~ 15303915 (-) True LOC103042179
XM_022681988.1 mRNA upstream 928467 15265108 ~ 15303915 (-) False LOC103042179
TU249876 other downstream 219490 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_6 other downstream 244356 14091509 ~ 14091590 (-) True trnas-gcu_6
trnas-gcu_5 other downstream 246159 14089706 ~ 14089787 (-) True trnas-gcu_5
TU249668 other downstream 741193 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 741193 13551270 ~ 13594753 (-) False LOC111195226
TU250431 other upstream 1040726 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1041067 15377708 ~ 15381208 (-) False smim18
TU250482 other upstream 1329470 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 2240182 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 2240284 16576925 ~ 16576997 (-) True trnar-ucg_6

Expression Profile