RNA id: XM_022681992.1


Basic Information

Item Value
RNA id XM_022681992.1
length 5637
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC103043525
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15309509 ~ 15340580 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCGGACTCGGTAGCGGCGGGGCTGGGAGAGGAGAAGGAGGCCGAGAGCGGGGAGAGCGGGGAGAAGGAGCGGGAGAAACGGGCCGCCTGCGGAGCCGCCAGGCCGGACACGGGCAGCGGCGCCTCGGAGCAGACCGAGACCCTCGGCTTCTACGAGAGAAAGGCAAAGAAGGCGGACGGCCGGCGCAGTGTGTCCGATCTGTCTCTGGTGAGGTTCGTCAGTGCTGAGCTGACCAGAGGATATTTTCTGGAACATAATGAGGCCAAATAcactgagaggagagagagggtcTATACCTGCCTCCGCATTCCCAGAGAACTGGAGAAGctgaTGGTGTTTGGGTTCTTCCTGTGTCTGGATGCGTTCCTGTATGTCTTCACCCTGTTACCCCTCAGAGTGTTGCTGGCGCTCATCAGACTGCTCACACTGCCCTGCTGTGGGCTCAGcggtTCTCGTCTCCTGCAGCCAGCTCAGGTGTGTGATGTTCTAAAGGGGTTTATCATGGTGCTGTGTTACTTCATGATGCACTACGTGGACTACTCCATGATGTACCACCTGATCCGGGGACAGTCTGTGATCAAGCTCTACATCATCTACAACATGCTGGAGGTGGCAGATCGGTTGTTCTCGTCGTTTGGGCAGGACATTCTAGACGCTCTGTACTGGACCGCCACCGAGCccaaagagaggaaaagagccCACATAGGAGTGATACCTCACTTCTTCATGGCTGTCCTTTACGTCTTTCTTCATGCCATTCTGATCATGGTTCAAGCCACCACCTTAAACGTGGCATTCAACTCTCACAACAAATCCCTGCTTACCATCATGATGTCCAACAACTTTGTTGAGATTAAGGGAAGTGTGTTCAAAAAGTTTGAGAAGAATAACCTCTTTCAGATGTCCAACAGTGataTTAAAGAAAGATTCACAAACTATGTGCTGTTATTAATCGTCTGCCTCAGAAATATGGAGCAGTTCTCCTGGAACCCAGATCATCTGTGGGTGCTGTTTCCGGATGTGTGTATGGTGATTGCGTCGGAGATTGCTGTGGATGTGGTGAAACACGCTTTCATTACTAAATTTAACGACATCCCAGCAGATGTGTACGGGGAATACAGAGCGAGCCTGGCATTTGATCTGGTCAGCAGCAGACAGAAAAACgcgtATACAGACTACAGTGACAGTGTGTCCAGAAGAATGGGATTcatccccctccccctcgcttTACTGctGATCCGGGTGGTGACGAGCTCGGTGAAGGTGCAGGGGGCGCTTGGCTTTGCGTGTGTGGTACTCTTTTATTTGGGTATGATCACACTAAAGGTGCTGAACAGCATCGTGCTGTTGGGGAAGTCGTGTGTTTATGTGAAGGAAGCAAACATGGAGGAGAAGCTGTTCCAGTCTCCCCCCTCCGCTGCCCCTAGCAGAGCATCCAGCAGAGCTCACCGGACCAAATACACGCGGGAACCAGCGGGTGAGTCTGCAGACGAGGGTGCATCTGCATCAATCATCACCCAGCCCTCCCACCAGCCGGAGTACACTGCCTCTAATCTCCCGACCAGCGAATCGGATCAGTTCCTCACTACGCCGGACGAGTCTGAGGAGAAGATCCTCACTCAGGACGGAACAGAACTCGTACACAGAGCTCCTAAAAAAGACCTGCTGGAGATCGACCGGTTTACCATCTGCGGGAACAGAATCGACTAAATCACCAACGCTTAGAGACATGCTTTACATGCTGGTGTTCAGAGAGTGACGAGAGCTGGGGCGACAGGGATGGACTGTTATATCCCCCAGTCTAACCAGCTCGATTTTATTTACCCTTGACCCTGGAGCTACTGGATCCGGGTAGAAAGGAATCGTGGGATATTTATTAAGAAGTGCATATAATTTATTGAAGCTGcagactaaaacacaaacacacacacttactacacacacattagacAACCTTACTTTTCTTTCTATACTCCCTCATTCTAAACTCATGGATCCATATTTGCTCGGATAAAAATTGAAGTAAGCCTTGGACTTAGAACTGAGATGGTTGCCTGGTTGCTTTGCCGTCCTGATGGggaagaagaaagaaatgaagaaagaaagagaaagagcgagtgagtgagcgagtgagcgTGCgcgggagggagagagggagagggagagatagagggagagagagacttagaaaaaaagtatatagaCTCACTTCAGATAGAGAATAAGGTCTACGTTCCCACAGCAGGTAAAAGCAacccaaatctgatctttttgaTCATACGTGGTACaggtgtgttctctgtgtggcagtgtgaacaCTGAATCTGATTTGGTTTTGAAATCCAATACATATCCAATAAACAACAATGTGTCTCAGACTGTACAACcagatcagaattcatgcaatatttttttttcttcatcaagGAAAAGGAACATAATGCATTAATGAGAGGGAAAATGGACGACAGCAGTGAGTGAGGGGATCAGTGGTGGGATAGTGTTTGGGTCACAACTGCTCtgtgtttctaatgaaatggCCGAACGCAGCCATAGgacagcactgctgcagtttcAAAGGCCATTAAAAGCCTAAATACAAagttaaacaaaaacacaaactaacGAAGTGGACGTGTCCGAATGACGTGTCCTTTTTACAGCAAGGTTGAACATATTCTCTGTGATGAGCCCAGCTGCAGACACTGAAACTGCTTGATAGCTCCTGTGATGCTGGGGAAGATGAAACCAAATCTTTACATGAAGCTTTGCTACTTGGTGCATAAGCATCAGTTTAGCAGAGTGAATTGTTCTGACCAACATCAGATGTACAGTagatcacaataaaaaaagagagtcCAAACAGCCTAAAATGATCAACAGACTTCAACAGAGAAACTcgtttacctgctgtgtgaacgtagcaTTTTGTATCGTGTCTTGTGACAAACACGGATGCTAACCTGAAGAATCTGCAGGTGTGAACTGAGTATAAAGCGAGGTCTGTGAGGAGTGGTTTAAAATGTGACTTTTCTTCATGCATGCATTTTCCATAGAGGtgaatttttacattatttcagtTGTTCAGATTGTGTGAAATGCTCCATTCTCTCAGAATTCTATACagtagtagtggtggtggtgatggaggTGATGGATTTTTACCAGACGTGCCAGAGTTTATTACTTAATAGATCAGGTCCATGATAATGTGAAACTATTGGTAATGAAATGGTAAAGAATACACTGCCTGATGCCTCAGACTGTTTTACTATCATTTTTTTTGGGAAGGTTCTGTCCTAAAACCACGGTAGTTCCCTTAGAAAACCTATTTTTATATTAGCTACAATTTTTACTGTATCAtcacacttaaaaaatatatcacataAAATGATAGTATAGTATTTATTAGGCCATATTTGTGCTGTAAATGTTACAACCCCCACTTCTCATCACATAACATTTTTGTTACTGTGAGCAACTTTACATCACACCACTCTGGAGACATCCCAGTGATGTCATTATTGGATTCCCTCTACAGGCTCACTACACATATTTTCACATTGATGATGGCACTGAGACCCTCGTAATTCCTCAAAAGCTACACGGGACATATCAGTGAAGTGTGTAGAGCAGTTTAGCTCTGTAAGTTTGTAAAGCACTGGTGTGTAAATTATAGCCAGGGTATCAAACAATgacttgtgtttttgtgtttttttttttattattattgtgaagcTAAAACGTGGTAATTCTGATTTTATCAGGTAGTTTTTATGCTCTGATACAGACTTCATTTATGATCAACCTTGATAAATCCATTCATTATAATTTAATGCCTGTGAATTGCAGACTAGCTCTTTAATAAGATTTTTATAGTATTAGTATTTTGTACGAACATGATACATGATAGAGATGCAGTGCAGAACACTATAGGCAAAGTCCAATAAATCATAATCATTCCTTTTGGTAATTTTACTTAAggaatatcatatatatatgtgtgtatgctCCTGGATAAATAAGTCACTCAGTACTGGATACAGTTGGTGCATGTTCAGTTATGATCAAATGTCTTAAAGTTGTGTAACTGTTTAAATGCTTGATCATATTCTGTACATTATTTGTTGTTAGTTCCTGtagaccaggggtcggcaattagttTTGGCCGCGGGACAGATATTTTTCAAGCTGTTATGTGGTTTTTGGGAAAAAAGGcgttataaggagatagggagcccaagaacgggcggaaaaagcGAGACTGAGGAGATGTGTAAACTAAAGTTTACCAAAgaagagttttattttttatttattttattatcattcgatatagttcaaacaacctcacgggccagacgTTTCACGCttggccgcctattgccgacccctccTGTAGACAATCCAgttttagctcttttttaaaaaatgaaatatgcactgatcagccataacattaaaaccacctcacTAATATGTAGGAATGCACCGGTTTGGGAATTCTGGGCTGATatagatacaaaaaaacaataaaaatacgaATTTTGGTATCACTGTGCAACCCTAAAAATATTTCCTAATCCATCAGTCAGCTTTCTTAGTCATGTGACCGATGCACTATGCCAAACCAATCACAAGCTCGACCAATTACAGATTAGGCCTGTTTATTTCAGAAAATTCTAGCTGTATTATTatgtttcttattatttatcCAGGAGTTCTGCTCTTCCGTTTGTTTGACTGCCTGTAAAGTTGATTTTGCTCTGTTTAAATAGCGTCACTCCAAAAACATCCTGATTCGACATTTAATATAGTATTATTTTAGACcaccttaataataaaaaaatatatgtgaacATATGGACTGAAAAATGCACTTTAGTTTACTAAATCAAACTATATTTCAGTTTATGTGGTTAcatgaacaaaaaatatatatcatacatTATAACATGGGTATGGGTAGCTCCTCAGTCTTTAAGATTCTTATTTATTGATCTAGTTTACTGAGTGGTTCTGACCTATGGGTgaattaaaattagttttttttttttttaatctttaaagaTGAAATAAATCTTTCTGATTTTTGGTGCTTATAATAACAGCTTATAGGACTGAATATCTAGAGAAGTACTATGGAAATAcaaagctttcatgtttaaaacaaacattagGATTTTCTTGAAAAATGTTGGCATTGCtcttgtttccttttttcttttctcattttaatttttcaaacttcagtgtgttttttgaaGGAGTAAGACTTCATAATACATGCATAagtataaaatagatatttaataaaaataaaataaaaataactgacatgccaaaagtcatgggacagcagtgtgtattttaataatgaagTTTTgccttgggaatgcccacacctgtattgTAAGTTGTGAGTGATGTTggacactggccagcatgctcatggcaaggccaggtgaattatgggagtgcGGCCTAATAGTCAGTGCCAGAAGGAAGGGACGTTTAATTTTTGAAGTTGTGTGGGCGTTTAATATTCCTATCAGTCATAGAAGTTATATaagtcatagaaggcattaccacccacagtggacagtgtacTGAGTTGCTTTTGTCTAGAACTGC

Function

GO: NA

KEGG:

id description
K23404 TAPT1; transmembrane anterior posterior transformation protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_452783.2 lncRNA downstream 257770 15047747 ~ 15052870 (-) True LOC103043324
TU250410 lncRNA downstream 257803 15047747 ~ 15052837 (-) False LOC103043324
XR_002651550.1 lncRNA downstream 309081 14959212 ~ 15001559 (-) False LOC111195232
TU250443 lncRNA upstream 41790 15372772 ~ 15379206 (-) True G184818
TU250440 lncRNA upstream 53732 15384714 ~ 15387101 (-) True G184816
XR_002651558.1 lncRNA upstream 81685 15412667 ~ 15419091 (-) False LOC111195235
TU250446 lncRNA upstream 81692 15412674 ~ 15419207 (-) True LOC111195235
TU250464 lncRNA upstream 233640 15564622 ~ 15564883 (-) True G184836
XM_022681986.1 mRNA downstream 6725 15265108 ~ 15303915 (-) False LOC103042179
XM_015606580.2 mRNA downstream 6725 15265108 ~ 15303915 (-) True LOC103042179
XM_022681988.1 mRNA downstream 6725 15265108 ~ 15303915 (-) False LOC103042179
XM_022681991.1 mRNA downstream 6726 15265108 ~ 15303914 (-) False LOC103042179
XM_022681987.1 mRNA downstream 6726 15265108 ~ 15303914 (-) False LOC103042179
XM_022681993.1 mRNA upstream 1153 15332135 ~ 15352286 (-) False LOC103041667
XM_007230211.2 mRNA upstream 1153 15332135 ~ 15352286 (-) False LOC103041667
XM_007230212.2 mRNA upstream 1153 15332135 ~ 15352286 (-) True LOC103041667
XM_022681994.1 mRNA upstream 36127 15367109 ~ 15372437 (-) False LOC103041363
XM_007230210.3 mRNA upstream 36127 15367109 ~ 15371868 (-) True LOC103041363
TU249876 other downstream 1194184 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_6 other downstream 1219050 14091509 ~ 14091590 (-) True trnas-gcu_6
trnas-gcu_5 other downstream 1220853 14089706 ~ 14089787 (-) True trnas-gcu_5
TU249668 other downstream 1715887 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 1715887 13551270 ~ 13594753 (-) False LOC111195226
TU250431 other upstream 46385 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 46726 15377708 ~ 15381208 (-) False smim18
TU250482 other upstream 335129 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 1245841 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 1245943 16576925 ~ 16576997 (-) True trnar-ucg_6

Expression Profile