RNA id: TU250443


Basic Information

Item Value
RNA id TU250443
length 538
lncRNA type sense_over
GC content 0.45
exon number 3
gene id G184818
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15372772 ~ 15379206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCAAAAATAATACcgctattatttttattgctttaaaagaGATGACAATATTATGATCCAATATGTCACACCCCTTGTGGGCACTGACACAAGgcatgaattaaaataaaaaaaaaatgtcaacaacccacacacaaccacacaccaacacacacacacaccttttggGTAGCCCTAGTGGAGAGGCGGAGTCCTGAGGGACGCAGAAAAATTGAGAGCCATCTGTCTGTGTGCTTAAAAAAAacctgtgttgttttttgatgCTGAGGACGACTCTTTGTCGggtttgctcttttttttcttggacGAGCCGGACGCCTCTGAGGATGCTGGTCTTTTCTCTACGGCCGGAGTGGACAGAGCCCTCTTCTTAAAGAGCTCACGCTCTCTTAGCAGGGAGGGGTCCATCCTGACTACTCCGAGCTCGAGACCGATCTGTTATTATCTCTTATTTACTCATTCACAGCTCATCAGCTCCCTTCTTCCACCACATTCACTGAAGAAACAGCACAGCGACTGTCGGCGAATctcactaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250424 lncRNA downstream 32192 15309509 ~ 15340580 (-) False LOC103043525
XR_452783.2 lncRNA downstream 319902 15047747 ~ 15052870 (-) True LOC103043324
TU250410 lncRNA downstream 319935 15047747 ~ 15052837 (-) False LOC103043324
XR_002651550.1 lncRNA downstream 371213 14959212 ~ 15001559 (-) False LOC111195232
TU250440 lncRNA upstream 5508 15384714 ~ 15387101 (-) True G184816
XR_002651558.1 lncRNA upstream 33461 15412667 ~ 15419091 (-) False LOC111195235
TU250446 lncRNA upstream 33468 15412674 ~ 15419207 (-) True LOC111195235
TU250464 lncRNA upstream 185416 15564622 ~ 15564883 (-) True G184836
TU250486 lncRNA upstream 281461 15660667 ~ 15664885 (-) True G184853
XM_022681994.1 mRNA downstream 335 15367109 ~ 15372437 (-) False LOC103041363
XM_007230210.3 mRNA downstream 904 15367109 ~ 15371868 (-) True LOC103041363
XM_022681993.1 mRNA downstream 20486 15332135 ~ 15352286 (-) False LOC103041667
XM_007230211.2 mRNA downstream 20486 15332135 ~ 15352286 (-) False LOC103041667
XM_007230212.2 mRNA downstream 20486 15332135 ~ 15352286 (-) True LOC103041667
XM_022682001.1 mRNA upstream 49187 15428393 ~ 15557314 (-) True LOC103043828
XM_022682004.1 mRNA upstream 49187 15428393 ~ 15557314 (-) False LOC103043828
XM_022682003.1 mRNA upstream 49187 15428393 ~ 15557314 (-) False LOC103043828
XM_022682002.1 mRNA upstream 49187 15428393 ~ 15557314 (-) False LOC103043828
XM_022682000.1 mRNA upstream 49187 15428393 ~ 15516248 (-) False LOC103043828
TU249876 other downstream 1256316 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_6 other downstream 1281182 14091509 ~ 14091590 (-) True trnas-gcu_6
trnas-gcu_5 other downstream 1282985 14089706 ~ 14089787 (-) True trnas-gcu_5
TU249668 other downstream 1778019 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 1778019 13551270 ~ 13594753 (-) False LOC111195226
TU250482 other upstream 286905 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 1197617 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 1197719 16576925 ~ 16576997 (-) True trnar-ucg_6
trnar-ccg_7 other upstream 1197822 16577028 ~ 16577100 (-) True trnar-ccg_7
trnar-ucu_5 other upstream 1197924 16577130 ~ 16577202 (-) True trnar-ucu_5

Expression Profile