RNA id: TU250670



Basic Information


Item Value
RNA id TU250670
length 280
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G184991
representative True

Chromosome Information


Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16643997 ~ 16644276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


acacacacacaaaacagaatCACGGGAGAAAATTAGATTCAACAACGCAGTGCAGTctttgtctcactctctcaatctATTGCTCTttgtttcactctctctctctctctctctctccaaatctctgtctttctttctctgtttctcactctctctctccctatttcTACATCATTGTCTCTCTATCGCTACATCTTGGTGTCTAGCTCTACACCTCTTTCTATTTCTGTAACTATTGTTCTCTGTTTcattctctatctatctatctatctatctatct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU250669 lncRNA downstream 69 16643491 ~ 16643928 (-) True G184990
TU250666 lncRNA downstream 8062 16635490 ~ 16635935 (-) True G184987
TU250648 lncRNA downstream 47747 16588066 ~ 16596250 (-) False G184975
TU250672 lncRNA upstream 3134 16647410 ~ 16703493 (-) True G184993
TU250677 lncRNA upstream 11521 16655797 ~ 16657592 (-) True G184996
TU250679 lncRNA upstream 29849 16674125 ~ 16675009 (-) True G184998
TU250681 lncRNA upstream 33699 16677975 ~ 16681857 (-) True G185000
TU250695 lncRNA upstream 55448 16699724 ~ 16701308 (-) True G185012
XM_015606673.2 mRNA downstream 287988 16351574 ~ 16356009 (-) False mab21l2
XM_022682016.1 mRNA downstream 287988 16351574 ~ 16356009 (-) True mab21l2
XM_007230241.2 mRNA downstream 459185 16180070 ~ 16184812 (-) True rps3a
XM_022682018.1 mRNA downstream 502727 16119674 ~ 16141270 (-) True fam160a1
XM_007230236.3 mRNA downstream 547677 16095030 ~ 16096320 (-) True dctpp1
XM_007232723.3 mRNA upstream 106376 16750652 ~ 16756899 (-) True fabp2
XM_007232722.3 mRNA upstream 121151 16765427 ~ 16798748 (-) True gucy1b3
XM_007232721.3 mRNA upstream 160301 16804577 ~ 16827354 (-) True gucy1a3
XM_007232754.3 mRNA upstream 226741 16871017 ~ 16874481 (-) True npy2r
XM_007230283.3 mRNA upstream 254774 16899050 ~ 16901684 (-) False lrat
trnar-ccu_39 other downstream 1266 16642659 ~ 16642731 (-) True trnar-ccu_39
trnaq-uug_3 other downstream 1394 16642531 ~ 16642603 (-) True trnaq-uug_3
trnar-ucg_17 other downstream 1752 16642173 ~ 16642245 (-) True trnar-ucg_17
trnar-acg_19 other downstream 1855 16642068 ~ 16642142 (-) True trnar-acg_19
trnar-ucg_16 other downstream 1959 16641966 ~ 16642038 (-) True trnar-ucg_16
XR_002651564.1 other upstream 253902 16898178 ~ 16901684 (-) True lrat
TU251079 other upstream 607991 17252267 ~ 17254633 (-) True G185295
TU251100 other upstream 651225 17295501 ~ 17300782 (-) True G185311
TU251103 other upstream 651225 17295501 ~ 17300281 (-) False G185311
TU251116 other upstream 685742 17330018 ~ 17331954 (-) False G185321

Expression Profile