RNA id: TU250695


Basic Information

Item Value
RNA id TU250695
length 1550
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G185012
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16699724 ~ 16701308 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttttaatcacagtttttatgcatcttggcattttatcctccaccagtcttacacactgcttttggataactttatgctgctttacttctggtgcaaaaattcaggtagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattacattccagatgtttttaatttggtaaaataaaagaaagaagtgtcttattttttccagagctacaAATACTATTAAGTCTAGTGGGAATAACTTGCGTTAGCTGTCTAGGTAATTATTAATTAGCTAGATCAGATGAGTTAGACTGTTCCACGCTAACAGCAGACTTactgaataaaaacaacaaaaaagtttttttcatgtGACCAACAGCACAATAACAGCACATGATCAATAATAGTATAATTAACTAACTCGTTATCTATCTGACAGCTTTATTACAACTATAACTGATCTGTTCCAGCCAATAATGCCTgtcaattacttaattactaagTGTAGCTCCGCCTTcttatgataaaataaaatagtagaatacgtttaaaaactcattttttagaaaACTGTTCCAACTGTTGGAATTGCTGAAAATCTGGGGATGGAAAGAaagtttagaaaataaaaaaattatgaaaaatagCTGCTGTTTGAGCTGTTTGTCATTAAAACAAATGGGGATGGGCAGAGCTaaacatcatactgcaaccagccagcagaggcactagaccTGTGGTTGGTGATTTCATTGatttagattaaataaaaatcattactAATATTCATTTCCCACTtttattgtaaactatttaaaataattatttgtaactatttaaatctgcattttgtattattaaaatatataaaatttacctGACTTTTGATttagatacatttttaaacaattttattaattaaatctgaataaacaaaatactggtTACATTATTAATCTAATTATTTGATAAGAGAACAATCATGGTACTCTAAttcttcacctaaaactttctTTAGCACAGTGTTTGTACTAAGTTGAAGCTAAGTTGCTAACTTGCTAATAGATTACGCTTTAAAGATTAAGGAACTGGTTCACCAGCTTGTTGCTGTCAGATCATGTTGGACCAATCAGCCATTAAATCACTGAGCCAACCAATCAAGACTCAAGCTCTTTGTAGAGGATGTCTTTGGCTACGTTCCAAAACCAGTTTCCGTATCCCAGTCTTGTTTACTTAACATGAGGGAATATTAAACTGGTTTTGGATCAGCCGTGGGGGACCACCTTTAAAAAAGACCCTCTACCCCAGAACATACGGACGCAGTGTTCACAGTTACAGGTCATCAGACTCGGGGATCTCGGGGGGCTCCACGGGGATGGTGGGCAGGATGAGGGGCAGGCCGTCGGAGATCCAGCCCTGGGCGGTCCTGTTGAAGGTGGGCCGCTTGGCTGCAGGGTCCTGAAGCTCAGGGTATCTCTGTGGGTTCAGGTCGACCTCCGGGAGCTTGAAGGTGATTCCTCGAGGGGCTTTCTCAAATCCTCCGAATGGTGTGGCCACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250681 lncRNA downstream 17867 16677975 ~ 16681857 (-) True G185000
TU250679 lncRNA downstream 24715 16674125 ~ 16675009 (-) True G184998
TU250677 lncRNA downstream 42132 16655797 ~ 16657592 (-) True G184996
TU250670 lncRNA downstream 55448 16643997 ~ 16644276 (-) True G184991
TU250669 lncRNA downstream 55796 16643491 ~ 16643928 (-) True G184990
TU250720 lncRNA upstream 131158 16832466 ~ 16832777 (-) True G185027
TU250726 lncRNA upstream 156083 16857391 ~ 16864206 (-) True G185033
TU250736 lncRNA upstream 219728 16921036 ~ 16922494 (-) True G185041
TU250777 lncRNA upstream 264701 16966009 ~ 16969764 (-) True G185073
TU250784 lncRNA upstream 330823 17032131 ~ 17032392 (-) True G185079
XM_015606673.2 mRNA downstream 343715 16351574 ~ 16356009 (-) False mab21l2
XM_022682016.1 mRNA downstream 343715 16351574 ~ 16356009 (-) True mab21l2
XM_007230241.2 mRNA downstream 514912 16180070 ~ 16184812 (-) True rps3a
XM_022682018.1 mRNA downstream 558454 16119674 ~ 16141270 (-) True fam160a1
XM_007230236.3 mRNA downstream 603404 16095030 ~ 16096320 (-) True dctpp1
XM_007232723.3 mRNA upstream 49344 16750652 ~ 16756899 (-) True fabp2
XM_007232722.3 mRNA upstream 64119 16765427 ~ 16798748 (-) True gucy1b3
XM_007232721.3 mRNA upstream 103269 16804577 ~ 16827354 (-) True gucy1a3
XM_007232754.3 mRNA upstream 169709 16871017 ~ 16874481 (-) True npy2r
XM_007230283.3 mRNA upstream 197742 16899050 ~ 16901684 (-) False lrat
trnar-ccu_39 other downstream 56993 16642659 ~ 16642731 (-) True trnar-ccu_39
trnaq-uug_3 other downstream 57121 16642531 ~ 16642603 (-) True trnaq-uug_3
trnar-ucg_17 other downstream 57479 16642173 ~ 16642245 (-) True trnar-ucg_17
trnar-acg_19 other downstream 57582 16642068 ~ 16642142 (-) True trnar-acg_19
trnar-ucg_16 other downstream 57686 16641966 ~ 16642038 (-) True trnar-ucg_16
XR_002651564.1 other upstream 196870 16898178 ~ 16901684 (-) True lrat
TU251079 other upstream 550959 17252267 ~ 17254633 (-) True G185295
TU251100 other upstream 594193 17295501 ~ 17300782 (-) True G185311
TU251103 other upstream 594193 17295501 ~ 17300281 (-) False G185311
TU251116 other upstream 628710 17330018 ~ 17331954 (-) False G185321

Expression Profile