RNA id: TU250777


Basic Information

Item Value
RNA id TU250777
length 3520
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G185073
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16966009 ~ 16969764 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTCCAAATGACTTTTATTAATGTGTACACAatcctgaccaaaaaaaagaaagaaaaaaatgaccatAAGAGCAAAGCATAAATTTGCTAGATGAGGGCTCTGGACTTTACAAAACACCAGTAAAGTGGTGAAAAACTCCCTAAATTTGGAATGTACCATGTTAAGACAGGgcagcacacaaacaaacaaacaaacaaacaaacaaacaaacagctagTAAAGGACATCTTTAGTGAAAATTAGTTAAACTTGTATGTTTTATTGAAGAACCAAAGAATGCTCTGTTTCCTAACTTTATTCTGATAAGCTCCACCTCCTGCACTGCAATAAAACCAGAATTCAGTCAAGGTAATACCCAAACACAGAGTTAGCATGATCTACAGATCTGCCTACTATTTTGGACACATCTAGCCAGATCTAGTTTTTAATGATTATTCCGTTAATTTGATAAATAAGAGAATCTGATCACTGCAGAACATCAGTAATATCAGTTCATCAGTAATCTGACGTATTTACATGAATCtgggtaatcagataatggTAAAACTCAAAGACAGTAAATCTCAATTCTGAAATCTCATAGTGTAAGACGTGATGTAATcatcacaaaacacaaacttcACACCGCAgcttatttttaacatattgagCTGCAATACGTAAATACATCACATAGAAGATGAAgatcattaatatattttagtttcagCGTCGCTTCAAGTGCTGTATTAATACTAACAGGGTCTGTTTTCACTCATGCGCAGcctgagacatcccagaatacaaAACCAGGACTCTGATATTGCATAAGCATGGTGTAGGAGGTGGGGCTTGCTAGAATATGTGCAGGAAAATTAACAGGATCAGGATATCTCTCTCTAAACTATCACTTAGAAACATGTTCTGTAGTTAACACTTACTTCTAATTGTTAACTCAACACTACGGGCACTTCTGTTCCATTTGGCATCATGGTTCTGCAACAAGGTTCTGTAACAAGGTTCTGCATTGTTCATAAGTTAAAGCATGCTGTGTTGGAGGCCACAACCATAGTAGCCATTCTTCTTTAGCTATTCATGGTGTATTATATGAAAGTGTCCTAGAGAGAGCTCTGCTGATACACATTAAGctagagatatacttgctgtttggCTGTACATATGTGTAGATAACCGGCTGCGCTGTGAACTGTGTGCACCTATGTGCTACTAGAATTACTCGAGGCTTCCACTACAGGCTGCCACAATGCCAAGAACAACTTTTACAGTGGAGAATACTAATTTTAGAATGTGTTTTGGGATTGTCAGATACTAGAGGGCACTCCCAAGTGAGTCCACaatgaatgggttcatatggagcaattaaggaaaatcataatttataaatgtttgatcatttttatactaAAACAAATACTAACTGTCTCAACACACAACAATATCAAATGTTCCAGTGCtgcaaacataatttttaagctATTAAATTCCagttttaaaccttttaaacggGACGaatcttttgtatttttgtgcaCAACAGACACACCAAACAGACGCAGGATACAGAAGGCAGACATCCTGCATACACAAATGCTTAGCTAGCAGCAAGTATATCTCCAACCACAGGCAAGAAAAACTGGTGATGAATTTGTGTTAAACTTGTGTAACACAATAACAGACCCCGGCACTGAAAGACAAAcacataatcaataataatgagGGGTTAAAAAGGTgctataaattaaatacaaattgaatttttttaacaaaatctgGCCTTAAGGCTCaaggagcttattttttttttttttttttaaataataataagtgctTCCCTTTCTTGTTGCATATTACAGAGTAAACATGAATAACGGACTGTACTTGCTTAATAATCACACACGGCCTTTTGTGGGCATcagacacacataaacagacacacagaatGCTTATTGTGTTCATAATCAGCCTAATAATCAACTGTGAACTGTGTTTTACTTAAGTGTGCACATGTGCGCATGTTTACATCCCTTAAATTCCAGTGCatccttgtttttttgtttttgttttttaaagatgaCCCCGTAAACACACTGTTATGTCCTCCTAAAATAGTAGAACATATTGTTTTGGACAGAGAACACGGCAGGACTTTATCTATGGGTTGACCTGTGTGTTTAATTTCAGACTATGCTGTCAcatctttataaataaaagattTGAAATGGGTAAAACGAGGCTGATCACTGTATTCAACTGTTTGAATCCTGACTTCATTTCTCAGAAGCACAGTAAACAGTGTTAACATGATCTGAACTATTGACTGTATATAAACATGGACAAAACAAAAACTAGTACTGGTTCCTAGTACTAGCCTGCTTtttggttgcagtatgatgtgtagccCCACCCAGCCTCATATGTTTCAATGATAAAAACAGCCACGCCCATTTTCCAACTCACTTTTATCCTCTTTATTAACTTTGGTTGCATTaacattttttgcagttttctaTTTTGGCAAGTCTGATATTAGTGTAAAACGACCAATTTTATGCAATTAGCTTTTTTTCAATAGCCAGCTGACGTTAACAGTTAGACGTGCTGGACTTTTCGTCACACTAGACCGCAGTAGCCTTAGTTTGTCTCAGCAGTAAACAGAGATAAGACCTGGTACTGTATTTGAtataatttaatgaaaatggAAATGTAGTTTGGTCATAGAATACATGAACTGCACTTTTACAGTTGTAGCCATACAAAACGCTCCACTAGTGGTTTTCAAGGCTGTGCTAcaaactcaatgaaggcggcCTGAGACACTTCGTCTGGGAAAAGAGGGTGGGGCTACCAAATGAGTAGGCGAATCTGACTGCACTTTTGGTTTCACTGCACAGGCTCTGATTTTTGGAAGTAAATGGAATCACAGTGTCcgtacttatatacagtcattgatGTAAACTGTAATCATATCAGTCTTTCACAACACTACTGGCTTCACTGCCTGTGTCCTCAGTGCTGTAATattcaaactctttttttttttttttttttttttttttacctttcttcaaatctccaaaacagcattCTTCATTCAGCACTCCACCAGAATCAGCTTCAGAAAGAACTCCAGCATCCGACTCCCTCCCTCCCCACCAGTGTGTAATCCTAttttctttcaaataaaaagaaCAGGTAAGAATGAAGTAAGTGCCTTTGAAAGCTCAGAGAGCAGGAAGTAGGTCAGTATAGACGCCACAGAGGACGATGTGACGCAAGGGTGGTGTATGGCACAGAGAGTGTGGTGAGGCCGAGCTGGGAGATGAGCACAAACGTCTGTGTTTTGAGCAGTGAGGGATGAGGGACGGGGGAGTATTATTGAAGGTATCGGtaaactttaaaacagtggTTCCCCGAGTCAGCCACCACCACATGGCCGTCGGAGGTCAGGGCCAGTCCCTGTGGGCCGTAGAGCGGGTCAGCGGAGGTGTTGATGTAGGAAAGAAAAGATCCGCTGCCAT

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250736 lncRNA downstream 43515 16921036 ~ 16922494 (-) True G185041
TU250726 lncRNA downstream 101803 16857391 ~ 16864206 (-) True G185033
TU250720 lncRNA downstream 133232 16832466 ~ 16832777 (-) True G185027
TU250695 lncRNA downstream 264701 16699724 ~ 16701308 (-) True G185012
TU250681 lncRNA downstream 284152 16677975 ~ 16681857 (-) True G185000
TU250784 lncRNA upstream 62367 17032131 ~ 17032392 (-) True G185079
TU251055 lncRNA upstream 234977 17204741 ~ 17216109 (-) True G185280
TU251056 lncRNA upstream 239718 17209482 ~ 17216109 (-) False G185280
TU251060 lncRNA upstream 260338 17230102 ~ 17232865 (-) False LOC103032582
TU251071 lncRNA upstream 343606 17313370 ~ 17321451 (-) False nutm1
XM_007230283.3 mRNA downstream 64325 16899050 ~ 16901684 (-) False lrat
XM_007232754.3 mRNA downstream 91528 16871017 ~ 16874481 (-) True npy2r
XM_007232721.3 mRNA downstream 138655 16804577 ~ 16827354 (-) True gucy1a3
XM_007232722.3 mRNA downstream 167261 16765427 ~ 16798748 (-) True gucy1b3
XM_007232723.3 mRNA downstream 209110 16750652 ~ 16756899 (-) True fabp2
XM_022682033.1 mRNA upstream 73111 17042875 ~ 17059662 (-) True fhdc1
XM_007230275.3 mRNA upstream 119390 17089154 ~ 17113139 (-) False LOC103033731
XM_022682035.1 mRNA upstream 119390 17089154 ~ 17113135 (-) False LOC103033731
XM_007230274.3 mRNA upstream 119390 17089154 ~ 17113135 (-) True LOC103033731
XM_007230277.3 mRNA upstream 119390 17089154 ~ 17113134 (-) False LOC103033731
XR_002651564.1 other downstream 64325 16898178 ~ 16901684 (-) True lrat
trnar-ccu_39 other downstream 323278 16642659 ~ 16642731 (-) True trnar-ccu_39
trnaq-uug_3 other downstream 323406 16642531 ~ 16642603 (-) True trnaq-uug_3
trnar-ucg_17 other downstream 323764 16642173 ~ 16642245 (-) True trnar-ucg_17
trnar-acg_19 other downstream 323867 16642068 ~ 16642142 (-) True trnar-acg_19
TU251079 other upstream 282503 17252267 ~ 17254633 (-) True G185295
TU251100 other upstream 325737 17295501 ~ 17300782 (-) True G185311
TU251103 other upstream 325737 17295501 ~ 17300281 (-) False G185311
TU251116 other upstream 360254 17330018 ~ 17331954 (-) False G185321
TU251913 other upstream 2978318 19948082 ~ 19951796 (-) True G185890

Expression Profile