RNA id: XM_022682039.1


Basic Information

Item Value
RNA id XM_022682039.1
length 4717
RNA type mRNA
GC content 0.44
exon number 7
gene id nutm1
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17313370 ~ 17328889 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagtaaatTAAATGTGGTTTATATTGGCTGAATagaatgctgtttatttttaaatataaaaacaagctGCACTGATAACTGATGAAGTGAGCGAACCGATCTTCAGTGATAGCTGGAGGCTCTGTTGACTTGCACTGCAGTGAAAgTTTTCTCATGCAGATGTACCTTCACCTGTAGACCTCACTTGTGGATCAAGCCACCAGTTCCCCTCCTTCTCAAGAGCAAGGAGGAGAAAGGACAGAGAAAGCCATGACAACCCCAATCACTGAGGGCACTGGAAAAAACGCAGAAGATTGTGGAGTTGTTCAAGACCTGGCATCCCTTTTCCTGTCCACTGAGCCAGAAGATGGTGAAGGGACCCCAGGATGTTCTACACCATTTGAAACATCTGTTCTTTCAACTGAAGCTGAACTGGGACTTGAATCTGCAAGTTCACCTTGTCTTTTTTTAGAAGACTTCCTTGTAGATGAGGACATCTTTATGAGTCCAGAATGTGTCGCCCTTCCTGAAGATCATCCAAGACCTTTCATGGAACCACCAGTAAATCCTGCAGTATATGTACCTGATCCTGAGCCCATTTTGAGTTCAAAACTTACTAAGAACCAAACTGAGCTTGATCCAACTCAAATGGAAGAGCAAGAAACTAAGCTTGCAATCTTGGAACTGCTTCGTCTGATGGCAGAAGATCCTGTTCAGTCTCAGCTGGAGTCTGAACCACTTGATTGGTTGCAGAAAAACCATCAAGAGCCTGGTAGTGAAGAACTTCATTCCTCCCATAACTCTCCGCCTTCCTCTATCGAAGCCATGGACTATGGTGCTGTTCCAGACCTGGCATCCCTTTTGTTGTCCACTGACGAGCTCATAACAATGAACACACTGCAGCCAGATGATGGCAAAGGGACCTTAGGAGATCCTACACCATTTGAAACATCTGTGCTTTCAACTGAAGCTAAACTGGAACTTGGATCTGCAAGTGCACCTTGTAATTTTTTAGATTACATCTTTATGAGCCCAGAATGTGTCGCCCTTCCCGAAGATCATCCAAAACCTTTCATGGAGCCACCAGTAAATCCTGCAGTGTATGTACCTGATCCTGAGCCCATTTTTGGTTCAAAACATACTAAGAACCAAACTGAGCTTGTTCCAACTCAAATGGAAGAGCAAGAAACTAAGCTTGCAATCTTGGAACTGCTTTGTCAGAAAAACAATCAAGGGCATGGTAGTGAAAAACTTCATTCTTCCCATAATTTTCCACCTTCCTCTTTCGAAGCCATGGAGAATGCATTCATATGGCCTCCTCCAGAGGCAAGATTCATATCTCAGTCTCCTCCAGAACCACAACCTTTTCAAGACGTCCCTGGACCATCACTGCCTCTAAACCTGCCTTCCACCTCCAACTATGTCTCAACTGAACCATGTGGTAATGCCTATCAATTACCCAGACTCCAGCATGTCCATCCTTCTTATCTTCCAGTAGTCCCATGTCTCACGGTTAACgggatgcaatcaaatcatcaaTTACCACCTGACTTCTTCCAGCCAAGCCTTCAGTTGCCCAATGGAATCTGGCTCATCCCACATAGTTCATATATGAAGATCAACCAGTCAAACTTCACAGTTGGCCCTCAAGTGCCTCAGATGTATAGCACTACATCATCAGTATCAGCTGCTCCTTCATTCAGTGAGGTCCCGCTCCTTCCTTGCCAAGACTTCCAATGTAACACCAGCCATGAACATGAACAGCCCCTTGTGGTACAATCGTGTTGCGAGGGGTATAATCCTTCAAAGGAACTGTATAAAAACTACAGGCGCTGGCAGATGTTCTGCAAGGTAGCATCTTTTGTCTACACCAGCAGTCCAGATGTGGAGGCCTTGGCTTGCTTCTTCATacaaGTAATAAACTCCATCACTCTTCAATGCCCCGGTGTCCCTCGTTTTGAAGCAGTGAAGATCGCTGTGTCACAGTGGGAGAAGCTGTCCGACTTTGAACGAATGGAGTACTACCACGAGGCTCAGAGGTTCATGGACTATGAACTGAAGGAAATGGTAAGCTTATGGACAATAGAAGCAGCAAGCAGTCAAGACACTGAGCAACAACAGCAAACTCCAACTGTGAGAGACGAACCACCAGCCATGGGCCAAGCTGCTGATCAGAAGAAAGGCTCTAACTCAGCACCACCTGACGTAGTTAAAGCGGCACCAGACGAGTACAGCGAGGTCATGGAAGCTCCAGAGACAAATGACAAAGAAGAGTCTGATGACAATCAAGACAAGAAATTCATGCAGTATGATGACAAGGAGCAAGATGGGTTTTGCAGTCACGTTGTCAGTGAGGACGACTCAGAAGTAGCACCAGAAGTATGCCACTTACATCCTCAATCCCCAGATGAATCCATTTATGCTACAGCACCAGAACCAAAACAACACCCTGAACCACAGCCTCAAACTCTCCAATCTGGCTACTACATAGACAATAGTATACTTCCACCACCTACGACCTTCAGTGAAAAACCTGCTTTGCTAAATCAATCGAGTGATCCTGGAATGCCCTTACCTGACAAAGATGTCCCGGTTCCTGCCTCAAGCACTGGGTTACAGCTTTTaccttttcaaaatgtgaaCACCCAGGTTAAATTTGAAATGTTTCCTCCACTGCCTGAACCTTTATCTTACTTCCAGATGAGTTCTATCAATCACAGTAGCATGGGACATCCTGATTGTGTCCCAGAAAACTGCTCTTTACCAACATTAGCTCAAAAGCACATCCATAGTGCAGTTGAATCTTGCCTGTCTGACCAGAATGCGCCTTCTTCTTCACATACAAGTGCACCTATTATTGGTTCAGTAAGTGAAGACATCAAGCAAGCTTCCAGTCCCAAAACCTTGTGGAAGCAGTTCCAAAGCACTGGAATTGACTTCAATAGTTTCCAGAATGATCTGGAGTCTCCTGAGAACACTGAAAATATAACCTCTGGGGCCTCTGTAGAAATGTCTTCTAAGGATGTGATCAAAGAGGACAATGCCGACAAAGGTATGACAGGACAGCAGTCACAGAATAAGAGCATGGCCGATTTAAAAAACGACAGGGATGGGACTGACATGGAAACATTTCATGTGACAGATAACAATGATGACCTTCCCAAGATGTTCATGAACCCAGTAGAGCAGGCATGTCCAGCTGCACAGCTGCCGATTAAAGACAATCTTAATCATCCAGAAGTGACTCGGCTCCTGACAACATCCTCTTCCTCAAGCCCGAACTACCTCACTTCATCTACACTTTCAACAATCCCTAGATCAGAaagcaaaccaaaccaagaaCCAAAAGAAATCAACAACAAGGCTGTTCATAGCTTTGTTATGGACACCAGAAAGACAAGGAGATCAGGTTCTTTGCAATCTGAAGAGACAGCAGGAAAACATGTTGATGTGAAAATGAAGAGAAAGGCACCAACACAAGCTGTAAACCCAATGTTAGCAAATGAGGGACACAGAAAACATCACCTGGTAAAAGCAAAGGAGATGACAACCGGTAAAGCAGCAAGAAGGGGCAAGCTTAATTGGGTGACACTTGTAGATGAAAGAAGATGGACAAGAAGCTTTGACAAAAAGGACAAGGATGTTCAGGCTCATAACAAGAAGGGAAACACAAATTATTTGGTTTATAATAGAAAGACCAGTCTTGTAGATATGCCAAGGGTCATCAAGCATGGGGCTGATGAGGAAAAAGTGCCTGAAATTCAAGTTATAGACCAATCAGAGAGAATAGACCAATTTGAGCGAAGTGTAGTGCAAGATCAAGTAAGCAATGGAAGTACAGATCAGAGGAGGATAACTAGAAAATGTTGCACGGCATCCCAACAGCTTCTGTTGGGAAATGGAGGAAAAGGAAAGCAgaatttggacaaaagcattggaaaaaacaagacaagctTGACTGAAGTACAAGAGAAAGCTGCCAAAAGGTCTCAAACCAGACAGCATAGTCAACACATGGTCATGACGAGGAAAGGGACAAGGACGAAACAAGAGGAAACAGCAAGAAAACGACCAGCAACGTCCACCACAGGCCTGCAGTGGCAGGAGCAGAGGGATCTTGGACAAGATCAGCAGAGTAGATGTGAGTACCAAGGGTTACAGTGCCAAGGTCTGAACAGATCGTCAACAAGGAGCAAGAAGCCATTAAAATCATCGCTTTTAGCTCTAGTTCTCACTCAAACTAGAcgaaaagaggaggagagaacaAACGATAAGCGAGAAGAAATAGAAGGATCCTTGACAAGGGCAAAGAGGGCAAACAGTGACAAAAGCTTGGAGAGTCTTCCAACAAAGAAGCAAAAAATGACCAGTAACAAGAAGCCAGGATTTCAATTTGACGTTGCAAATTTGAAAGCTAGCAGCACACCATCAAGCTCAGAAAGGCCGAGATGGAAAACAAGGGGATCTCCAGCCACCCCAAGAGAAATgagagcagaagagagagagcagaggaggTTACTCGAGTTTGTTCTTcacaaaaacactataaaacacatGGTAAAAAGCTGTGGAGCCAAAGAGTAAAAACTCAAACCAGTCAGAAGGGACTACGACAAAGGTGGAGCGACAGACTAGCAACActgcaaaagagaaagagggcaaAGTTGACAACGCAGAAACCATCctgatttcatttttatttacaaacttCATATATTAAAATGTCCCTTGAACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251060 lncRNA downstream 88573 17230102 ~ 17232865 (-) False LOC103032582
TU251055 lncRNA downstream 105329 17204741 ~ 17216109 (-) True G185280
TU251056 lncRNA downstream 105329 17209482 ~ 17216109 (-) False G185280
TU250784 lncRNA downstream 289046 17032131 ~ 17032392 (-) True G185079
TU250777 lncRNA downstream 351674 16966009 ~ 16969764 (-) True G185073
TU251117 lncRNA upstream 1129 17330018 ~ 17331006 (-) True G185321
TU251124 lncRNA upstream 28539 17357428 ~ 17360299 (-) True G185328
TU251128 lncRNA upstream 41863 17370752 ~ 17429772 (-) False LOC111195245
TU251109 lncRNA upstream 62982 17391871 ~ 17393833 (-) True G185317
TU251113 lncRNA upstream 66364 17395253 ~ 17397947 (-) True G185318
XM_022681559.1 mRNA downstream 80411 17230085 ~ 17241027 (-) True LOC103032582
XM_007230273.3 mRNA downstream 196687 17118052 ~ 17124751 (-) True sfrp2
XM_007230274.3 mRNA downstream 208303 17089154 ~ 17113135 (-) True LOC103033731
XM_022682042.1 mRNA upstream 101073 17429962 ~ 17501430 (-) True LOC103027395
XM_022682049.1 mRNA upstream 277216 17606105 ~ 17652838 (-) False rbm47
XM_022682045.1 mRNA upstream 277216 17606105 ~ 17652837 (-) True rbm47
XM_022682050.1 mRNA upstream 277216 17606105 ~ 17652836 (-) False rbm47
XM_022682046.1 mRNA upstream 277216 17606105 ~ 17638061 (-) False rbm47
TU251100 other downstream 20656 17295501 ~ 17300782 (-) True G185311
TU251103 other downstream 21157 17295501 ~ 17300281 (-) False G185311
TU251079 other downstream 66805 17252267 ~ 17254633 (-) True G185295
XR_002651564.1 other downstream 419754 16898178 ~ 16901684 (-) True lrat
trnar-ccu_39 other downstream 678707 16642659 ~ 16642731 (-) True trnar-ccu_39
TU251116 other upstream 1129 17330018 ~ 17331954 (-) False G185321
TU251913 other upstream 2619193 19948082 ~ 19951796 (-) True G185890
TU251936 other upstream 2788537 20117426 ~ 20127092 (-) True LOC111195252
TU252009 other upstream 3242300 20571189 ~ 20575951 (-) False G185943
TU252016 other upstream 3242300 20571189 ~ 20572918 (-) False G185943

Expression Profile