RNA id: TU251079


Basic Information

Item Value
RNA id TU251079
length 2318
RNA type TUCP
GC content 0.40
exon number 2
gene id G185295
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17252267 ~ 17254633 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtatatagttttcttttattttaatattgtctTTGTTATTAAAACAGTGGTTTCTTGAATTTTGTCAGTGTTATTTAATGTAATGGACAGTTATCAAAGCGTTTTTACAATATGGTATTGCTGATTATTGTACCATTTCAATATATcagtaaaataagaaattaaaacatataatataaacaatattaattgTGTAATGATGAGACTTCAGAACTGCTGCTACTCTCCTGCTACAAGAACTCCTTCTGACTGGATGTTCTGGATAATCAGATAACTGATTTGTGAGTTTTAATAAAGAGattttgaacaaaaatataaacattattttgcattttgttgGAAGAACACGATGCAGAGGAAATATCATCTACACTGCACACAGTGCAATAATCACATTCATCCTCTAATCAtggaaaaatatgaataaacacCTCAGacagaaatataaacaaaactataGTGCTAAATCCACCAGCCTGGAATGTAAAAAAGTATGCTTTATTATTGTTctattgtgtgtatttaaattCCAGTGTCAGATACTGTTTCCAGATTGCTAATTGCAGtggttgttttattgtttttaaaatttgataaataaaaaagatctaatatttaataatattatttattagaaaTAAACGTTATTTTGGTATAAGGCTGAACCATTTTACACATATCACAGACAAGCCATCAATGTGCACTGTGtagtttgatttagggcgtgtcatttagtctttgctatcgtaacgactggacaagtacaccttgcgcgcctcgaaaaaggcatgtactaattctcgtAATTAagcatgggtgtggttaattttgggcacaacgtgaaataaaccaatcgaCGTGTCAaatgctcatcattctctttaagagccaggtgagctctgactttggcatattGCAATTTTAATAGCGCAGCGCTtttgcgcttctcagcagaggaagctgATCTGCTTGATCACGCTGTGAAAGTGcgtgagcagctcatttaagggaacagtaattttattttattctgtattctgtttattgttgatgtaaaagttgggtttattgccatcagctgccagagccctgagagagcacaattgtgaGAAAGCTTggtctctctctgggtgggtacagtagatggcgctcttcccccacatcactctaaagggtgatgtggatcagcacatggcatctgtgagctgttgtatcagaattTCCTTAGAGTGCGCTGTGATTATActgggcaatgctgcatcagcagtaaattgggagaaaatgctaaaaaaaaaaaacttaaataaggtgtgaaaatagactgttggctgggtgtaagatagcaatgagcatctttatgagccttgcgcagggtgtaagataggacccaAAGTCTTCAGCTTCCAAAGGAAAAGAAATAAACGACAAAAAGTACCATATCAACCATGCTTACCTTTTGCGAGAGTTTTGCACAGTGCACctatcaagcataacattatgaccgcCTCCTTGTTTTTATATCAATTTTCCATCTATattatgtgtgttgtgttggtaggagtggatcagacacacacattaacacctcATGCACccccaccatgctaatcagtgctaatcactgcagtgctgagaataaacgatccatcacccaaataataataatccaggatgctctctgtggtgtttttcttTCCTGTGTGGTTCTGAATATTAAAGAACAGTGATGAAGGAAGATAATAAAACTATTGAGTGTCTTATAAGATCAGACGAGCTGATAAAACAATAGATGAAAGGGAAGAAATAAGCAACTTTTTCTGATAAAACTCCCAATGATGCTCCTCCTAAGTGTCCTTCTGCTGCTCCAGGATGAATTCGGACAGCTGGTTGATGTCAGTGAGGGCTGGGTGACACTgcagcatcatcatcaccacactGTCCTGCCCCGGAAAGATCTTCACCAGCTCCCGCTTCAGCTGCTGAGTCTCCTCCACCGACCTGTCCTTCACCTTCTCCCCCGGAGGAGACGGACTCCTGCCCGACTTCTGAGGTCTACCAGCTCCTCCTGGTGTCCGTTCACGATAATGCAGCACCTCGGTGTGAGCTCGAGGCTGGGAGGTGGGCGGGGGGAAGGAGGAGGCCACGCCTGCAAAGGAGTGGCTGGCAGGTAAGGGCGGGCTGAGGAAAAAGAGACAGCGTTAGAAAATCAttactgtatacatatatttaacaagctgaactgcttgaatttttgcaccaggagtggcatatcGTTAcgcaaaaacagtgtgtaagactggtggaggagaacatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251060 lncRNA downstream 19402 17230102 ~ 17232865 (-) False LOC103032582
TU251055 lncRNA downstream 36158 17204741 ~ 17216109 (-) True G185280
TU251056 lncRNA downstream 36158 17209482 ~ 17216109 (-) False G185280
TU250784 lncRNA downstream 219875 17032131 ~ 17032392 (-) True G185079
TU250777 lncRNA downstream 282503 16966009 ~ 16969764 (-) True G185073
TU251071 lncRNA upstream 58737 17313370 ~ 17321451 (-) False nutm1
TU251117 lncRNA upstream 75385 17330018 ~ 17331006 (-) True G185321
TU251124 lncRNA upstream 102795 17357428 ~ 17360299 (-) True G185328
TU251128 lncRNA upstream 116119 17370752 ~ 17429772 (-) False LOC111195245
TU251109 lncRNA upstream 137238 17391871 ~ 17393833 (-) True G185317
XM_022681559.1 mRNA downstream 11240 17230085 ~ 17241027 (-) True LOC103032582
XM_007230273.3 mRNA downstream 127516 17118052 ~ 17124751 (-) True sfrp2
XM_007230275.3 mRNA downstream 139128 17089154 ~ 17113139 (-) False LOC103033731
XM_022682035.1 mRNA downstream 139132 17089154 ~ 17113135 (-) False LOC103033731
XM_007230274.3 mRNA downstream 139132 17089154 ~ 17113135 (-) True LOC103033731
XM_022682039.1 mRNA upstream 66805 17321438 ~ 17328889 (-) True nutm1
XM_022682042.1 mRNA upstream 175329 17429962 ~ 17501430 (-) True LOC103027395
XM_022682049.1 mRNA upstream 351472 17606105 ~ 17652838 (-) False rbm47
XM_022682045.1 mRNA upstream 351472 17606105 ~ 17652837 (-) True rbm47
XM_022682050.1 mRNA upstream 351472 17606105 ~ 17652836 (-) False rbm47
XR_002651564.1 other downstream 350583 16898178 ~ 16901684 (-) True lrat
trnar-ccu_39 other downstream 609536 16642659 ~ 16642731 (-) True trnar-ccu_39
trnaq-uug_3 other downstream 609664 16642531 ~ 16642603 (-) True trnaq-uug_3
trnar-ucg_17 other downstream 610022 16642173 ~ 16642245 (-) True trnar-ucg_17
trnar-acg_19 other downstream 610125 16642068 ~ 16642142 (-) True trnar-acg_19
TU251100 other upstream 40868 17295501 ~ 17300782 (-) True G185311
TU251103 other upstream 40868 17295501 ~ 17300281 (-) False G185311
TU251116 other upstream 75385 17330018 ~ 17331954 (-) False G185321
TU251913 other upstream 2693449 19948082 ~ 19951796 (-) True G185890
TU251936 other upstream 2862793 20117426 ~ 20127092 (-) True LOC111195252

Expression Profile